| 745 | -- | 748 | Wai-ki Yip, Christoph Lange. Quantitative trait prediction based on genetic marker-array data, a simulation study |
| 749 | -- | 756 | Jan Fostier, Sebastian Proost, Bart Dhoedt, Yvan Saeys, Piet Demeester, Yves Van de Peer, Klaas Vandepoele. A greedy, graph-based algorithm for the alignment of multiple homologous gene lists |
| 757 | -- | 763 | Oliver Keller, Martin Kollmar, Mario Stanke, Stephan Waack. A novel hybrid gene prediction method employing protein multiple sequence alignments |
| 764 | -- | 770 | Guillaume Marçais, Carl Kingsford. A fast, lock-free approach for efficient parallel counting of occurrences of ::::k::::-mers |
| 771 | -- | 776 | Yi Zhang, Xianhui Wang, Le Kang. A ::::k::::-mer scheme to predict piRNAs and characterize locust piRNAs |
| 777 | -- | 784 | Yejun Wang, Qing Zhang, Ming-an Sun, Dianjing Guo. High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles |
| 785 | -- | 790 | Yang Cao, Lin Song, Zhichao Miao, Yun Hu, Liqing Tian, Taijiao Jiang. Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation |
| 791 | -- | 796 | Guy Tsafnat, Jaron Schaeffer, Andrew Clayphan, Jonathan R. Iredell, Sally R. Partridge, Enrico W. Coiera. Computational inference of grammars for larger-than-gene structures from annotated gene sequences |
| 797 | -- | 806 | Clement Chung, Jian Liu, Andrew Emili, Brendan J. Frey. Computational refinement of post-translational modifications predicted from tandem mass spectrometry |
| 807 | -- | 814 | Alexandra Posekany, K. Felsenstein, P. Sykacek. Biological assessment of robust noise models in microarray data analysis |
| 815 | -- | 821 | V. M. Lourenço, Ana M. Pires, M. Kirst. Robust linear regression methods in association studies |
| 822 | -- | 828 | Rick Twee-Hee Ong, Xuanyao Liu, Wan-Ting Poh, Xueling Sim, Kee Seng Chia, Yik-Ying Teo. A method for identifying haplotypes carrying the causative allele in positive natural selection and genome-wide association studies |
| 829 | -- | 836 | Christian Rödelsperger, Peter Krawitz, Sebastian Bauer, Jochen Hecht, Abigail W. Bigham, Michael Bamshad, Birgit Jonske de Condor, Michal R. Schweiger, Peter N. Robinson. Identity-by-descent filtering of exome sequence data for disease-gene identification in autosomal recessive disorders |
| 837 | -- | 843 | Tianqi Zhu, Yucheng Hu, Zhi-Ming Ma, De-Xing Zhang, Tiejun Li, Ziheng Yang. Efficient simulation under a population genetics model of carcinogenesis |
| 844 | -- | 852 | Stuart R. Jefferys, Morgan C. Giddings. Baking a mass-spectrometry data PIE with McMC and simulated annealing: predicting protein post-translational modifications from integrated top-down and bottom-up data |
| 853 | -- | 859 | Lin Hou, Lin Wang, Minping Qian, Dong Li, Chao Tang, Yunping Zhu, Minghua Deng, Fangting Li. Modular analysis of the probabilistic genetic interaction network |
| 860 | -- | 862 | Sebastian Deorowicz, Szymon Grabowski. Compression of DNA sequence reads in FASTQ format |
| 863 | -- | 864 | Robert Schmieder, Robert Edwards. Quality control and preprocessing of metagenomic datasets |
| 865 | -- | 866 | Michael Edmonson, Jinghui Zhang, Chunhua Yan, Richard P. Finney, Daoud M. Meerzaman, Kenneth H. Buetow. Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format |
| 867 | -- | 869 | Angela Goncalves, Andrew Tikhonov, Alvis Brazma, Misha Kapushesky. A pipeline for RNA-seq data processing and quality assessment |
| 870 | -- | 871 | Qiang Song, Andrew D. Smith. Identifying dispersed epigenomic domains from ChIP-Seq data |
| 872 | -- | 873 | Andrew T. Magis, John C. Earls, Youn-Hee Ko, James A. Eddy, Nathan D. Price. Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup |
| 874 | -- | 876 | Yanxiang Zhou, Juliane Liepe, Xia Sheng, Michael P. H. Stumpf, Chris Barnes. GPU accelerated biochemical network simulation |
| 877 | -- | 878 | Xuejian Xiong, Hongyan Song, Tuan On, Lucas Lochovsky, Nicholas J. Provart, John Parkinson. PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya |
| 879 | -- | 880 | Xin Wang, Camille Terfve, John C. Rose, Florian Markowetz. HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens |
| 881 | -- | 882 | Matthieu Vignes, Juliette Blanchet, Damien Leroux, Florence Forbes. SpaCEM:::3:::: a software for biological module detection when data is incomplete, high dimensional and dependent |
| 883 | -- | 884 | Yanqi Hao, Anna Merkoulovitch, James Vlasblom, Shuye Pu, Andrei L. Turinsky, Denitza Roudeva, Brian Turner, Jack Greenblatt, Shoshana J. Wodak. OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms |
| 885 | -- | 886 | Francesca Chignola, Silvia Mari, Tim J. Stevens, Rasmus H. Fogh, Valeria Mannella, Wayne Boucher, Giovanna Musco. The CCPN Metabolomics Project: a fast protocol for metabolite identification by 2D-NMR |
| 887 | -- | 888 | Riku Louhimo, Sampsa Hautaniemi. CNAmet: an R package for integrating copy number, methylation and expression data |
| 889 | -- | 890 | Thomas A. Down, Matias Piipari, Tim J. P. Hubbard. Dalliance: interactive genome viewing on the web |
| 891 | -- | 893 | Mark Y. Tong, Christopher A. Cassa, Isaac S. Kohane. Automated validation of genetic variants from large databases: ensuring that variant references refer to the same genomic locations |