Journal: Bioinformatics

Volume 29, Issue 16

1925 -- 1933Benjamin M. Good, Andrew I. Su. Crowdsourcing for bioinformatics
1934 -- 1937Aurelio A. Moya-García, Juan A. G. Ranea. Insights into polypharmacology from drug-domain associations
1938 -- 1945Zhi-Zhong Chen, Fei Deng, Lusheng Wang. Exact algorithms for haplotype assembly from whole-genome sequence data
1946 -- 1952Dominik Heider, Robin Senge, Weiwei Cheng, Eyke Hüllermeier. Multilabel classification for exploiting cross-resistance information in HIV-1 drug resistance prediction
1953 -- 1962Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner. de novo peptide sequencing
1963 -- 1969Jérôme Ambroise, Anne-Sophie Piette, Cathy Delcorps, Leen Rigouts, Bouke C. de Jong, Leonid Irenge, Annie Robert, Jean-Luc Gala. AdvISER-PYRO: Amplicon Identification using SparsE Representation of PYROsequencing signal
1970 -- 1979Guy Baele, Philippe Lemey. Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency
1980 -- 1986Pedro Sfriso, Adam Hospital, Agustí Emperador, Modesto Orozco. Exploration of conformational transition pathways from coarse-grained simulations
1987 -- 1996Shandian Zhe, Syed A. Z. Naqvi, Yifan Yang, Yuan Qi. Joint network and node selection for pathway-based genomic data analysis
1997 -- 2003Colin D. Veal, Hang Xu, Katherine Reekie, Robert C. Free, Robert J. Hardwick, David McVey, Anthony J. Brookes, Edward J. Hollox, Christopher J. Talbot. Automated design of paralogue ratio test assays for the accurate and rapid typing of copy number variation
2004 -- 2008Salvatore Alaimo, Alfredo Pulvirenti, Rosalba Giugno, Alfredo Ferro. Drug-target interaction prediction through domain-tuned network-based inference
2009 -- 2016Alberto Rezola, Jon Pey, Luis F. de Figueiredo, Adam Podhorski, Stefan Schuster, Angel Rubio, Francisco J. Planes. Selection of human tissue-specific elementary flux modes using gene expression data
2017 -- 2023Jinmyung Jung, Doheon Lee. Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning
2024 -- 2031Xi Zhou, Pengcheng Chen, Qiang Wei, Xueling Shen, Xin Chen. Human interactome resource and gene set linkage analysis for the functional interpretation of biologically meaningful gene sets
2032 -- 2040Ying-Ying Xu, Fan Yang, Yang Zhang, Hong-bin Shen. iLocator) reveals protein mislocalizations in cancer tissues
2041 -- 2043Come Raczy, Roman Petrovski, Christopher T. Saunders, Ilya Chorny, Semyon Kruglyak, Elliott H. Margulies, Han-Yu Chuang, Morten Källberg, Swathi A. Kumar, Arnold Liao, Kristina M. Little, Michael P. Strömberg, Stephen W. Tanner. Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms
2044 -- 2045Jianlin He, Xinxi Sun, Xiaojian Shao, Liji Liang, Hehuang Xie. DMEAS: DNA methylation entropy analysis software
2046 -- 2048Andreas Heger, Caleb Webber, Martin Goodson, Chris P. Ponting, Gerton Lunter. GAT: a simulation framework for testing the association of genomic intervals
2049 -- 2050Sangsoon Woo, Xuekui Zhang, Renan Sauteraud, François Robert, Raphael Gottardo. PING 2.0: an R/Bioconductor package for nucleosome positioning using next-generation sequencing data
2051 -- 2052Michal Rostkowski, Ola Spjuth, Patrik Rydberg. WhichCyp: prediction of cytochromes P450 inhibition
2053 -- 2055Alessandro Pandini, Arianna Fornili, Franca Fraternali, Jens Kleinjung. GSATools: analysis of allosteric communication and functional local motions using a structural alphabet
2056 -- 2058Claudio Mirabello, Gianluca Pollastri. Porter, PaleAle 4.0: high-accuracy prediction of protein secondary structure and relative solvent accessibility
2059 -- 2061Inna Dubchak, Matthew Munoz, Alexander Poliakov, Nathan Salomonis, Simon Minovitsky, Rolf Bodmer, Alexander C. Zambon. Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
2062 -- 2063Alexey Lagunin, Sergey Ivanov, Anastasia Rudik, Dmitry Filimonov, Vladimir Poroikov. in silico prediction of drug-induced gene expression profiles based on structural formula
2064 -- 2065Yingfeng Wang, Tae-Hyuk Ahn, Zhou Li, Chongle Pan. Sipros/ProRata: a versatile informatics system for quantitative community proteomics
2066 -- 2067Chao Zhang, Jiguang Wang, Kristina Hanspers, Dong Xu, Luonan Chen, Alexander R. Pico. NOA: a cytoscape plugin for network ontology analysis
2068 -- 2070Norbert Dojer, Pawel Bednarz, Agnieszka Podsiadlo, Bartek Wilczynski. BNFinder2: Faster Bayesian network learning and Bayesian classification
2071 -- 2072Bülent Arman Aksoy, Jianjiong Gao, Gideon Dresdner, Weiqing Wang, Alex Root, Xiaohong Jing, Ethan G. Cerami, Chris Sander. PiHelper: an open source framework for drug-target and antibody-target data
2073 -- 0Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M. G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, Christina Kendziorski. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments