| 3107 | -- | 3108 | Christian Theil Have, Lars Juhl Jensen. Are graph databases ready for bioinformatics? |
| 3109 | -- | 3112 | Daudi Jjingo, Jianrong Wang, Andrew B. Conley, Victoria V. Lunyak, I. King Jordan. cis-regulatory elements with both boundary and enhancer sequences in the human genome |
| 3113 | -- | 3120 | Elizabeth Purdom, Christine Ho, Catherine S. Grasso, Michael Quist, Raymond J. Cho, Paul T. Spellman. Methods and challenges in timing chromosomal abnormalities within cancer samples |
| 3121 | -- | 3127 | Bernhard Haubold, Linda Krause, Thomas Horn, Peter Pfaffelhuber. An alignment-free test for recombination |
| 3128 | -- | 3134 | Pasi Rastas, Lars Paulin, Ilkka Hanski, Rainer Lehtonen, Petri Auvinen. Lep-MAP: fast and accurate linkage map construction for large SNP datasets |
| 3135 | -- | 3142 | Lingyun Zou, Chonghan Nan, Fuquan Hu. Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles |
| 3143 | -- | 3150 | Tobias Marschall, Iman Hajirasouliha, Alexander Schönhuth. MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels |
| 3151 | -- | 3157 | Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio. BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming |
| 3158 | -- | 3166 | Guang Qiang Dong, Hao Fan, Dina Schneidman-Duhovny, Ben M. Webb, Andrej Sali. Optimized atomic statistical potentials: assessment of protein interfaces and loops |
| 3167 | -- | 3173 | Kourosh Zarringhalam, Ahmed Enayetallah, Alex Gutteridge, Ben Sidders, Daniel Ziemek. Molecular causes of transcriptional response: a Bayesian prior knowledge approach |
| 3174 | -- | 3180 | Anastasia Deckard, Ron C. Anafi, John B. Hogenesch, Steven B. Haase, John Harer. Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data |
| 3181 | -- | 3190 | Ciarán P. Fisher, Nicholas J. Plant, J. Bernadette Moore, Andrzej M. Kierzek. QSSPN: dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism in human cells |
| 3191 | -- | 3198 | Kai-Cheng Hsu, Feng-Sheng Wang. Fuzzy optimization for detecting enzyme targets of human uric acid metabolism |
| 3199 | -- | 3203 | Sven Degroeve, Lennart Martens. 2PIP: a tool for MS/MS peak intensity prediction |
| 3204 | -- | 3210 | Tao Wang, Jie Liu, Li Shen, Julian Tonti-Filippini, Yun Zhu, Haiyang Jia, Ryan Lister, John W. Whitaker, Joseph R. Ecker, A. Harvey Millar, Bing Ren, Wei Wang. STAR: an integrated solution to management and visualization of sequencing data |
| 3211 | -- | 3219 | Magdalena Przydzial, Barun Bhhatarai, Amar Koleti, Uma Vempati, Stephan C. Schürer. GPCR ontology: development and application of a G protein-coupled receptor pharmacology knowledge framework |
| 3220 | -- | 3221 | Melanie A. Huntley, Jessica L. Larson, Christina Chaivorapol, Gabriel Becker, Michael Lawrence, Jason A. Hackney, Joshua S. Kaminker. ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses |
| 3222 | -- | 3224 | Yanbo Ye, Bo Wei, Lei Wen, Simon Rayner. BlastGraph: a comparative genomics tool based on BLAST and graph algorithms |
| 3225 | -- | 3226 | Dadi Gao, Robert Middleton, John E. J. Rasko, William Ritchie. miREval 2.0: a web tool for simple microRNA prediction in genome sequences |
| 3227 | -- | 3229 | Xueqiu Lin, Deqiang Sun, Benjamin Rodriguez, Qian Zhao, Hanfei Sun, Yong Zhang, Wei Li. BSeQC: quality control of bisulfite sequencing experiments |
| 3230 | -- | 3231 | Rui C. Chaves, Jean-Luc Pellequer. DockAFM: benchmarking protein structures by docking under AFM topographs |
| 3232 | -- | 3234 | Jianguo Xia, Ngan H. Lyle, Matthew L. Mayer, Olga M. Pena, Robert E. W. Hancock. INVEX - a web-based tool for integrative visualization of expression data |
| 3235 | -- | 3237 | Xiaojing Wang, Bing Zhang. customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search |
| 3238 | -- | 3240 | Wenchao Jiang, Pinghao Li, Shuang Wang, Yuan Wu, Meng Xue, Lucila Ohno-Machado, Xiaoqian Jiang. WebGLORE: a Web service for Grid LOgistic REgression |
| 3241 | -- | 3242 | Thomas Cokelaer, Dennis Pultz, Lea M. Harder, Jordi Serra-Musach, Julio Saez-Rodriguez. BioServices: a common Python package to access biological Web Services programmatically |
| 3243 | -- | 3245 | Burkhard Rost. ISCB: past-present perspective for the International Society for Computational Biology |
| 3246 | -- | 3247 | . ISCB/SPRINGER series in computational biology |