| 3081 | -- | 3084 | Wenlong Shen, Dong Wang, Bingyu Ye, Minglei Shi, Lei Ma, Yan Zhang, Zhihu Zhao. GC3-biased gene domains in mammalian genomes |
| 3085 | -- | 3091 | Felix A. Klein, Tibor Pakozdi, Simon Anders, Yad Ghavi-Helm, Eileen E. M. Furlong, Wolfgang Huber. FourCSeq: analysis of 4C sequencing data |
| 3092 | -- | 3098 | Douglas H. Phanstiel, Alan P. Boyle, Nastaran Heidari, Michael P. Snyder. Mango: a bias-correcting ChIA-PET analysis pipeline |
| 3099 | -- | 3104 | Donghyung Lee, T. Bernard Bigdeli, Vernell S. Williamson, Vladimir I. Vladimirov, Brien P. Riley, Ayman H. Fanous, Silviu-Alin Bacanu. DISTMIX: direct imputation of summary statistics for unmeasured SNPs from mixed ethnicity cohorts |
| 3105 | -- | 3113 | Junho Kim, SangHyeon Kim, Hojung Nam, Sangwoo Kim, Doheon Lee. SoloDel: a probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data |
| 3114 | -- | 3121 | Robert Kleinkauf, Martin Mann, Rolf Backofen. antaRNA: ant colony-based RNA sequence design |
| 3122 | -- | 3129 | Greg Malysa, Mikel Hernaez, Idoia Ochoa, Milind Rao, Karthik Ganesan, Tsachy Weissman. QVZ: lossy compression of quality values |
| 3130 | -- | 3138 | Joaquín Tárraga, Mariano Pérez, Juan M. Orduña, José Duato, Ignacio Medina, Joaquín Dopazo. A parallel and sensitive software tool for methylation analysis on multicore platforms |
| 3139 | -- | 3146 | Chunyu Zhao, Ahmet Sacan. UniAlign: protein structure alignment meets evolution |
| 3147 | -- | 3155 | Mohammed El-Kebir, Hayssam Soueidan, Thomas Hume, Daniela Beisser, Marcus T. Dittrich, Tobias Müller, Guillaume Blin, Jaap Heringa, Macha Nikolski, Lodewyk F. A. Wessels, Gunnar W. Klau. xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model |
| 3156 | -- | 3162 | Sebastian Gibb, Korbinian Strimmer. Differential protein expression and peak selection in mass spectrometry data by binary discriminant analysis |
| 3163 | -- | 3171 | Zi Wang, Wei Yuan, Giovanni Montana. Sparse multi-view matrix factorization: a multivariate approach to multiple tissue comparisons |
| 3172 | -- | 3180 | Huaying Fang, Chengcheng Huang, Hongyu Zhao, Minghua Deng. CCLasso: correlation inference for compositional data through Lasso |
| 3181 | -- | 3188 | Vishal R. Patel, Nicholas Ceglia, Michael Zeller, Kristin Eckel-Mahan, Paolo Sassone-Corsi, Pierre Baldi. The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework |
| 3189 | -- | 3197 | Amine Merouane, Nicolas Rey-Villamizar, Yanbin Lu, Ivan Liadi, Gabrielle Romain, Jennifer Lu, Harjeet Singh, Laurence J. N. Cooper, Navin Varadarajan, Badrinath Roysam. Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING) |
| 3198 | -- | 3206 | Chalini D. Wijetunge, Isaam Saeed, Berin A. Boughton, Jeffrey M. Spraggins, Richard M. Caprioli, Antony Bacic, Ute Roessner, Saman K. Halgamuge. EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data |
| 3207 | -- | 3209 | Ka Kit Lam, Kurt LaButti, Asif Khalak, David N. C. Tse. de novo assembly using long reads |
| 3210 | -- | 3212 | Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis, Evgenia V. Kriventseva, Evgeny M. Zdobnov. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs |
| 3213 | -- | 3215 | Yana Safonova, Alla Lapidus, Jennie Lill. IgSimulator: a versatile immunosequencing simulator |
| 3216 | -- | 3218 | Siavash Sheikhizadeh, Dick de Ridder. K-mer tries |
| 3219 | -- | 3221 | Matthew C. LaFave, Gaurav K. Varshney, Shawn M. Burgess. GeIST: a pipeline for mapping integrated DNA elements |
| 3222 | -- | 3224 | G. C. P. van Zundert, Alexandre M. J. J. Bonvin. DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes |
| 3225 | -- | 3227 | Henry Löffler-Wirth, Martin Kalcher, Hans Binder. oposSOM: R-package for high-dimensional portraying of genome-wide expression landscapes on bioconductor |
| 3228 | -- | 3230 | José M. Juanes, Ana Miguel, Lucas J. Morales, José E. Pérez-Ortín, Vicente Arnau. A web application for the unspecific detection of differentially expressed DNA regions in strand-specific expression data |
| 3231 | -- | 3233 | Marta R. A. Matos, Bettina Knapp, Lars Kaderali. lpNet: a linear programming approach to reconstruct signal transduction networks |
| 3234 | -- | 3236 | Adrian Friebel, Johannes Neitsch, Tim Johann, Seddik Hammad, Jan G. Hengstler, Dirk Drasdo, Stefan Hoehme. TiQuant: software for tissue analysis, quantification and surface reconstruction |
| 3237 | -- | 3239 | Yi Shen, Fan Gao, Minghui Wang, Ao Li. RPdb: a database of experimentally verified cellular reprogramming records |
| 3240 | -- | 0 | Arnold Kuzniar, Somdutta Dhir, Harm Nijveen, Sándor Pongor, Jack A. M. Leunissen. Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks |