| 2403 | -- | 2410 | Xu Hua, Luxiao Chen, Jin Wang, Jie Li, Edgar Wingender. Identifying cell-specific microRNA transcriptional start sites |
| 2411 | -- | 2418 | Bin Liu 0014, Ren Long, Kuo-Chen Chou. iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework |
| 2419 | -- | 2426 | Aleksander Jankowski, Jerzy Tiuryn, Shyam Prabhakar. Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data |
| 2427 | -- | 2434 | En-Shiun Annie Lee, Fiona J. Whelan, Dawn M. E. Bowdish, Andrew K. C. Wong. Partitioning and correlating subgroup characteristics from Aligned Pattern Clusters |
| 2435 | -- | 2443 | Jing Yang, Qi-Yu Jin, Biao Zhang, Hong-bin Shen. ab initio residue contact map prediction using dynamic fusion strategy and Gaussian noise filter |
| 2444 | -- | 2450 | Naama Hurwitz, Dina Schneidman-Duhovny, Haim J. Wolfson. Memdock: an α-helical membrane protein docking algorithm |
| 2451 | -- | 2456 | Daisuke Kuroda, Jeffrey J. Gray. Shape complementarity and hydrogen bond preferences in protein-protein interfaces: implications for antibody modeling and protein-protein docking |
| 2457 | -- | 2463 | Kerstin Bunte, Eemeli Leppäaho, Inka Saarinen, Samuel Kaski. Sparse group factor analysis for biclustering of multiple data sources |
| 2464 | -- | 2472 | Eva-Maria Geissen, Jan Hasenauer, Stephanie Heinrich, Silke Hauf, Fabian J. Theis, Nicole Radde. MEMO: multi-experiment mixture model analysis of censored data |
| 2473 | -- | 2480 | Gianni Monaco, Hao Chen, Michael Poidinger, Jinmiao Chen, João Pedro de Magalhães, Anis Larbi. flowAI: automatic and interactive anomaly discerning tools for flow cytometry data |
| 2481 | -- | 2489 | Venetia Pliatsika, Phillipe Loher, Aristeidis G. Telonis, Isidore Rigoutsos. MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments |
| 2490 | -- | 2498 | Subhadip Basu, Dariusz Plewczynski, Satadal Saha, Matylda Roszkowska, Marta Magnowska, Ewa Baczynska, Jakub Wlodarczyk. 2dSpAn: semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity |
| 2499 | -- | 2501 | Tarun Mall, John Eckstein, David C. Norris, Hiral Vora, Nowlan H. Freese, Ann E. Loraine. ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins |
| 2502 | -- | 2504 | Hyungro Lee, Min Su Lee, Wazim Mohammed Ismail, Mina Rho, Geoffrey C. Fox, Sangyoon Oh, Haixu Tang. MGEScan: a Galaxy-based system for identifying retrotransposons in genomes |
| 2505 | -- | 2507 | E. Andres Houseman, Kevin C. Johnson, Brock C. Christensen. OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA |
| 2508 | -- | 2510 | William Chow, Kim Brugger, Mario Cáccamo, Ian Sealy, James Torrance, Kerstin Howe. gEVAL - a web-based browser for evaluating genome assemblies |
| 2511 | -- | 2513 | E. C. Schofield, Tim Carver, Premanand Achuthan, P. Freire-Pritchett, M. Spivakov, John A. Todd, Oliver S. Burren. CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets |
| 2514 | -- | 2516 | Peng Jiang, James A. Thomson, Ron M. Stewart. Quality control of single-cell RNA-seq by SinQC |
| 2517 | -- | 2519 | Alexander J. Titus, E. Andres Houseman, Kevin C. Johnson, Brock C. Christensen. methyLiftover: cross-platform DNA methylation data integration |
| 2520 | -- | 2523 | Jens Roat Kultima, Luis Pedro Coelho, Kristoffer Forslund, Jaime Huerta-Cepas, Simone S. Li, Marja Driessen, Anita Yvonne Voigt, Georg Zeller, Shinichi Sunagawa, Peer Bork. MOCAT2: a metagenomic assembly, annotation and profiling framework |
| 2524 | -- | 2525 | Miguel Pignatelli. TnT: a set of libraries for visualizing trees and track-based annotations for the web |
| 2526 | -- | 2527 | Yousong Peng, Lei Yang, Honglei Li, Yuanqiang Zou, Lizong Deng, Aiping Wu, Xiangjun Du, Dayan Wang, Yuelong Shu, Taijiao Jiang. PREDAC-H3: a user-friendly platform for antigenic surveillance of human influenza a(H3N2) virus based on hemagglutinin sequences |
| 2528 | -- | 2530 | Romain Fenouil, Nicolas Descostes, Lionel Spinelli, Frederic Koch, Muhammad Ahmad Maqbool, Touati Benoukraf, Pierre Cauchy, Charlène Innocenti, Pierre Ferrier, Jean-Christophe Andrau. Pasha: a versatile R package for piling chromatin HTS data |
| 2531 | -- | 2533 | Kota Kasahara, Neetha Mohan, Ikuo Fukuda, Haruki Nakamura. mDCC_tools: characterizing multi-modal atomic motions in molecular dynamics trajectories |
| 2534 | -- | 2536 | Hui-Chun Lu, Julián Herrera Braga, Franca Fraternali. PinSnps: structural and functional analysis of SNPs in the context of protein interaction networks |
| 2537 | -- | 2538 | Jimmy C. F. Ngai, Pui-In Mak, Shirley W. I. Siu. ProtPOS: a python package for the prediction of protein preferred orientation on a surface |
| 2539 | -- | 2541 | Erik Walinda, Daichi Morimoto, Mayu Nishizawa, Masahiro Shirakawa, Kenji Sugase. Amaterasu |
| 2542 | -- | 2544 | Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio. INPS-MD: a web server to predict stability of protein variants from sequence and structure |
| 2545 | -- | 2547 | Zachary Ziegler, Molly Schmidt, Thomas Gurry, Virginia Burger, Collin M. Stultz. Mollack: a web server for the automated creation of conformational ensembles for intrinsically disordered proteins |
| 2548 | -- | 2550 | Guillaume Postic, Yassine Ghouzam, Jean-Christophe Gelly. OREMPRO web server: orientation and assessment of atomistic and coarse-grained structures of membrane proteins |
| 2551 | -- | 2553 | Abhinav Nellore, Christopher Wilks, Kasper D. Hansen, Jeffrey T. Leek, Ben Langmead. Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce |
| 2554 | -- | 2555 | Linda Odenthal-Hesse, Julien Y. Dutheil, Fabian Klötzl, Bernhard Haubold. hotspot: software to support sperm-typing for investigating recombination hotspots |
| 2556 | -- | 2558 | Christine B. Peterson, M. Bogomolov, Y. Benjamini, C. Sabatti. TreeQTL: hierarchical error control for eQTL findings |
| 2559 | -- | 2561 | Timo Lubitz, Jens Hahn, Frank T. Bergmann, Elad Noor, Edda Klipp, Wolfram Liebermeister. SBtab: a flexible table format for data exchange in systems biology |
| 2562 | -- | 2564 | Petar Velickovic, Pietro Liò. Muxstep: an open-source C ++ multiplex HMM library for making inferences on multiple data types |
| 2565 | -- | 0 | Marta Rosikiewicz, Marc Robinson-Rechavi. IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics |