| 3053 | -- | 3057 | Anna A. Deeva, Evgenia A. Temlyakova, Anatoly A. Sorokin, Elena V. Nemtseva, Valentina A. Kratasyuk. Structural distinctions of fast and slow bacterial luciferases revealed by phylogenetic analysis |
| 3058 | -- | 3064 | Jianwei Zhang, Dave Kudrna, Ting Mu, Weiming Li, Dario Copetti, Yeisoo Yu, Jose Luis Goicoechea, Yang Lei, Rod A. Wing. Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences |
| 3065 | -- | 3071 | Jacob Shujui Hsu, Johnny S. H. Kwan, Zhicheng Pan, Maria-Mercè Garcia-Barcelo, Pak Chung Sham, Miao-Xin Li. Inheritance-mode specific pathogenicity prioritization (ISPP) for human protein coding genes |
| 3072 | -- | 3080 | Junho Kim, Ju Heon Maeng, Jae Seok Lim, Hyeonju Son, JuneHawk Lee, Jeong Ho Lee, Sangwoo Kim. Vecuum: identification and filtration of false somatic variants caused by recombinant vector contamination |
| 3081 | -- | 3088 | Hákon Guðbjartsson, Guðmundur Fr. Georgsson, Sigurjón Axel Guðjónsson, Ragnar þór Valdimarsson, Jóhann H. Sigurðsson, Sigmar K. Stefánsson, Gísli Másson, Gísli Magnússon, Vilmundur Pálmason, Kári Stefánsson. GORpipe: a query tool for working with sequence data based on a Genomic Ordered Relational (GOR) architecture |
| 3089 | -- | 3097 | John P. Barton, Eleonora De Leonardis, Alice Coucke, Simona Cocco. ACE: adaptive cluster expansion for maximum entropy graphical model inference |
| 3098 | -- | 3106 | Bram Gerritsen, Aridaman Pandit, Arno C. Andeweg, Rob J. De Boer. RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data |
| 3107 | -- | 3115 | Ping-Ping Wen, Shao-Ping Shi, Hao-Dong Xu, Li-na Wang, Jian-Ding Qiu. in silico prediction of species-specific methylation sites based on information gain feature optimization |
| 3116 | -- | 3123 | Wangren Qiu, Bi-Qian Sun, Xuan Xiao, Zhao-Chun Xu, Kuo-Chen Chou. iPTM-mLys: identifying multiple lysine PTM sites and their different types |
| 3124 | -- | 3132 | Daniel L. Greenfield, Oliver Stegle, Alban Rrustemi. GeneCodeq: quality score compression and improved genotyping using a Bayesian framework |
| 3133 | -- | 3141 | Jianhua Jia, Liuxia Zhang, Zi Liu, Xuan Xiao, Kuo-Chen Chou. pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC |
| 3142 | -- | 3149 | Pradeep Anand Ravindranath, Michel F. Sanner. AutoSite: an automated approach for pseudo-ligands prediction - from ligand-binding sites identification to predicting key ligand atoms |
| 3150 | -- | 3154 | Haixiang Zhang, Yinan Zheng, Zhou Zhang, Tao Gao, Brian Joyce, Grace Yoon, Wei Zhang, Joel Schwartz, Allan Just, Elena Colicino, Pantel Vokonas, Lihui Zhao, Jinchi Lv, Andrea A. Baccarelli, Lifang Hou, Lei Liu. Estimating and testing high-dimensional mediation effects in epigenetic studies |
| 3155 | -- | 3164 | Lei Meng, Aaron Striegel, Tijana Milenkovic. Local versus global biological network alignment |
| 3165 | -- | 3174 | Jing Ma, Ali Shojaie, George Michailidis. Network-based pathway enrichment analysis with incomplete network information |
| 3175 | -- | 3182 | Dhanya Sridhar, Shobeir Fakhraei, Lise Getoor. A probabilistic approach for collective similarity-based drug-drug interaction prediction |
| 3183 | -- | 3189 | Na Le Dang, Tyler B. Hughes, Varun Krishnamurthy, S. Joshua Swamidass. A simple model predicts UGT-mediated metabolism |
| 3190 | -- | 3192 | Kai Kruse, Clemens B. Hug, Benjamín Hernández-Rodríguez, Juan M. Vaquerizas. TADtool: visual parameter identification for TAD-calling algorithms |
| 3193 | -- | 3195 | Bai-Han Zhu, Ying-Nan Song, Wei Xue, Gui-Cai Xu, Jun Xiao, Ming-Yuan Sun, Xiaowen Sun, Jiongtang Li. PEP_scaffolder: using (homologous) proteins to scaffold genomes |
| 3196 | -- | 3198 | Ewa A. Bergmann, Bo-Juen Chen, Kanika Arora, Vladimir Vacic, Michael C. Zody. Conpair: concordance and contamination estimator for matched tumor-normal pairs |
| 3199 | -- | 3200 | Vittorio Fortino, Roberto Tagliaferri, Dario Greco. CONDOP: an R package for CONdition-Dependent Operon Predictions |
| 3201 | -- | 3203 | Steffi Grote, Kay Prüfer, Janet Kelso, Michael Dannemann. ABAEnrichment: an R package to test for gene set expression enrichment in the adult and developing human brain |
| 3204 | -- | 3206 | Simon Dellicour, Rebecca Rose, Nuno R. Faria, Philippe Lemey, Oliver G. Pybus. SERAPHIM: studying environmental rasters and phylogenetically informed movements |
| 3207 | -- | 3209 | James R. Staley, James A. Blackshaw, Mihir A. Kamat, Steve Ellis, Praveen Surendran, Benjamin B. Sun, Dirk S. Paul, Daniel Freitag, Stephen Burgess, John Danesh, Robin Young, Adam S. Butterworth. PhenoScanner: a database of human genotype-phenotype associations |
| 3210 | -- | 3212 | David Dao, Adam Fraser, Jane Hung, Vebjorn Ljosa, Shantanu Singh, Anne E. Carpenter. CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets |
| 3213 | -- | 0 | Vikas Bansal, Vikas Bansal, Ondrej Libiger. A statistical method for the detection of variants from next-generation resequencing of DNA poolsA probabilistic method for the detection and genotyping of small indels from population-scale sequence data |