| 311 | -- | 319 | Alden King-Yung Leung, Tsz-Piu Kwok, Raymond Wan, Ming Xiao, Pui-Yan Kwok, Kevin Y. Yip, Ting-Fung Chan. OMBlast: alignment tool for optical mapping using a seed-and-extend approach |
| 320 | -- | 326 | Serge Moulin, Nicolas Seux, Stéphane Chrétien, Christophe Guyeux, Emmanuelle Lerat. Simulation-based estimation of branching models for LTR retrotransposons |
| 327 | -- | 333 | Sufang Wang, Michael Gribskov. Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis |
| 334 | -- | 340 | Ilham A. Shahmuradov, Rozaimi Mohamad Razali, Salim Bougouffa, Aleksandar Radovanovic, Vladimir B. Bajic. bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli |
| 341 | -- | 346 | Xiang Cheng, Shu-Guang Zhao, Xuan Xiao, Kuo-Chen Chou. iATC-mISF: a multi-label classifier for predicting the classes of anatomical therapeutic chemicals |
| 347 | -- | 353 | Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio. SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments |
| 354 | -- | 362 | Iakov I. Davydov, Marc Robinson-Rechavi, Nicolas Salamin. State aggregation for fast likelihood computations in molecular evolution |
| 363 | -- | 372 | Shuaibing He, Manman Li, Xiaotong Ye, Hongyu Wang, Wenkang Yu, Wenjing He, Yun Wang, Yanjiang Qiao. Site of metabolism prediction for oxidation reactions mediated by oxidoreductases based on chemical bond |
| 373 | -- | 381 | Saulo Henrique Pires de Oliveira, Jiye Shi, Charlotte M. Deane. Comparing co-evolution methods and their application to template-free protein structure prediction |
| 382 | -- | 389 | Christopher L. Barrett, Fenix W. D. Huang, Christian M. Reidys. Sequence-structure relations of biopolymers |
| 390 | -- | 396 | Dmytro Guzenko, Sergei V. Strelkov. Granular clustering of de novo protein models |
| 397 | -- | 404 | Roman Hornung, David Causeur, Christoph Bernau, Anne-Laure Boulesteix. Improving cross-study prediction through addon batch effect adjustment or addon normalization |
| 405 | -- | 413 | Lili Liu, Zijun Zhang, Taotao Sheng, Ming Chen. DEF: an automated dead-end filling approach based on quasi-endosymbiosis |
| 414 | -- | 424 | Monther Alhamdoosh, Milica Ng, Nicholas J. Wilson, Julie M. Sheridan, Huy Huynh, Michael J. Wilson, Matthew E. Ritchie. Combining multiple tools outperforms individual methods in gene set enrichment analyses |
| 425 | -- | 427 | Stefan Canzar, Karlynn E. Neu, Qingming Tang, Patrick C. Wilson, Aly A. Khan. BASIC: BCR assembly from single cells |
| 428 | -- | 431 | Phuc-Loi Luu, Daniela Gerovska, Mikel Arrospide-Elgarresta, Sugoi Retegi-Carrión, Hans R. Schöler, Marcos J. Araúzo-Bravo. P3BSseq: parallel processing pipeline software for automatic analysis of bisulfite sequencing data |
| 432 | -- | 434 | Ekaterina A. Khramtsova, Barbara E. Stranger. Assocplots: a Python package for static and interactive visualization of multiple-group GWAS results |
| 435 | -- | 437 | Vojtech Bystrý, Tomas Reigl, Adam Krejci, Martin Demko, Barbora Hanakova, Andrea Grioni, Henrik Knecht, Max Schlitt, Peter Dreger, Leopold Sellner, Dietrich Herrmann, Marine Pingeon, Myriam Boudjoghra, Jos Rijntjes, Christiane Pott, Anton W. Langerak, Patricia J. T. A. Groenen, Frederic Davi, Monika Brüggemann, Nikos Darzentas, also on Behalf of EuroClonality-NGS. ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data |
| 438 | -- | 440 | Xingjian Xu, Zhaohua Ji, Zhang Zhang. CloudPhylo: a fast and scalable tool for phylogeny reconstruction |
| 441 | -- | 443 | Krishna Choudhary, Luyao Ruan, Fei Deng, Nathan P. Shih, Sharon Aviran. SEQualyzer: interactive tool for quality control and exploratory analysis of high-throughput RNA structural profiling data |
| 444 | -- | 446 | Giacomo Janson, Chengxin Zhang, Maria Giulia Prado, Alessandro Paiardini. PyMod 2.0: improvements in protein sequence-structure analysis and homology modeling within PyMOL |
| 447 | -- | 449 | Jonathan W. Nelson, Jiri Sklenar, Anthony P. Barnes, Jessica Minnier. The START App: a web-based RNAseq analysis and visualization resource |
| 450 | -- | 452 | Yu Zhang, Juan Xie, Jinyu Yang, Anne Fennell, Chi Zhang, Qin Ma. QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data |
| 453 | -- | 455 | Luca Bianco, Samantha Riccadonna, Enrico Lavezzo, Marco Falda, Elide Formentin, Duccio Cavalieri, Stefano Toppo, Paolo Fontana. Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms |
| 456 | -- | 457 | Elisa Salviato, Vera Djordjilovic, Monica Chiogna, Chiara Romualdi. simPATHy: a new method for simulating data from perturbed biological PATHways |
| 458 | -- | 460 | Wei Lan, Min Li, Kaijie Zhao, Jin Liu, Fang-Xiang Wu, Yi Pan, Jianxin Wang. LDAP: a web server for lncRNA-disease association prediction |
| 461 | -- | 463 | Thomas Van Parys, Ine Melckenbeeck, Maarten Houbraken, Pieter Audenaert, Didier Colle, Mario Pickavet, Piet Demeester, Yves Van de Peer. A Cytoscape app for motif enumeration with ISMAGS |
| 464 | -- | 466 | Daniel P. Russo, Marlene T. Kim, Wenyi Wang, Daniel Pinolini, Sunil M. Shende, Judy Strickland, Thomas Hartung, Hao Zhu. CIIPro: a new read-across portal to fill data gaps using public large-scale chemical and biological data |
| 467 | -- | 469 | Zhi-Yong Liang, Hong-Yan Lai, Huan Yang, Chang-Jian Zhang, Hui Yang, Huan-Huan Wei, Xin-Xin Chen, Ya-Wei Zhao, Zhen-Dong Su, Wen-Chao Li, En-Ze Deng, Hua Tang, Wei Chen, Hao Lin. Pro54DB: a database for experimentally verified sigma-54 promoters |
| 470 | -- | 0 | Dalia Cohn-Alperovich, Alona Rabner, Ilona Kifer, Yael Mandel-Gutfreund, Zohar Yakhini. Mutual enrichment in aggregated ranked lists with applications to gene expression regulation |