Journal: Bioinformatics

Volume 36, Issue 21

5129 -- 5132Diogo Pratas, Jorge Miguel Silva. Persistent minimal sequences of SARS-CoV-2
5133 -- 5138Shijie Qin, Xinyi Xia, Xuejia Shi, Xinglai Ji, Fei Ma, Liming Chen. Mechanistic insights into SARS-CoV-2 epidemic via revealing the features of SARS-CoV-2 coding proteins and host responses upon its infection
5139 -- 5144Jordan M. Eizenga, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison. Efficient dynamic variation graphs
5145 -- 5150Gamze Gürsoy, Charlotte M. Brannon, Fabio C. P. Navarro, Mark Gerstein. FANCY: fast estimation of privacy risk in functional genomics data
5151 -- 5158Xiyu Peng, Karin S. Dorman. AmpliCI: a high-resolution model-based approach for denoising Illumina amplicon data
5159 -- 5168Xiaoyong Pan, Jasper Zuallaert, Xi Wang, Hong-bin Shen, Elda Posada Campos, Denys O. Marushchak, Wesley De Neve. ToxDL: deep learning using primary structure and domain embeddings for assessing protein toxicity
5169 -- 5176Anil Kumar Hanumanthappa, Jaswinder Singh, Kuldip K. Paliwal, Jaspreet Singh, Yaoqi Zhou. Single-sequence and profile-based prediction of RNA solvent accessibility using dilated convolutional neural network
5177 -- 5186Yi-Jun Tang, Yihe Pang, Bin Liu. IDP-Seq2Seq: identification of intrinsically disordered regions based on sequence to sequence learning
5187 -- 5193Gourab Ghosh Roy, Nicholas Geard, Karin Verspoor, Shan He. PoLoBag: Polynomial Lasso Bagging for signed gene regulatory network inference from expression data
5194 -- 5204Dimitris V. Manatakis, Aaron Vandevender, Elias S. Manolakos. An information-theoretic approach for measuring the distance of organ tissue samples using their transcriptomic signatures
5205 -- 5213Mete Akgün, Ali Burak Ünal, Bekir Ergüner, Nico Pfeifer, Oliver Kohlbacher. Identifying disease-causing mutations with privacy protection
5214 -- 5222Canhong Wen, Hailong Ba, Wenliang Pan, Meiyan Huang. Co-sparse reduced-rank regression for association analysis between imaging phenotypes and genetic variants
5223 -- 5228Tianzhong Yang, Peng Wei 0005, Wei Pan. Integrative analysis of multi-omics data for discovering low-frequency variants associated with low-density lipoprotein cholesterol levels
5229 -- 5236Ruey Leng Loo, Queenie Chan, Henrik Antti, Jia V. Li, H. Ashrafian, Paul Elliott, Jeremiah Stamler, Jeremy K. Nicholson, Elaine Holmes, Julien Wist. Strategy for improved characterization of human metabolic phenotypes using a COmbined Multi-block Principal components Analysis with Statistical Spectroscopy (COMPASS)
5237 -- 5246Yasin Ilkagan Tepeli, Ali Burak Ünal, Furkan Mustafa Akdemir, Oznur Tastan. PAMOGK: a pathway graph kernel-based multiomics approach for patient clustering
5247 -- 5254James H. Joly, William E. Lowry, Nicholas A. Graham. Differential Gene Set Enrichment Analysis: a statistical approach to quantify the relative enrichment of two gene sets
5255 -- 5261Keno K. Bressem, Lisa C. Adams, Robert A. Gaudin, Daniel Tröltzsch, Bernd Hamm, Marcus R. Makowski, Chan-Yong Schüle, Janis Lucas Vahldiek, Stefan Markus Niehues. Highly accurate classification of chest radiographic reports using a deep learning natural language model pre-trained on 3.8 million text reports
5262 -- 5263Legana C. H. W. Fingerhut, David J. Miller, Jan M. Strugnell, Norelle L. Daly, Ira Cooke. ampir: an R package for fast genome-wide prediction of antimicrobial peptides
5264 -- 5266Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals. PEWO: a collection of workflows to benchmark phylogenetic placement
5267 -- 5268Jon D. Hill. Gene Teller: an extensible Alexa Skill for gene-relevant databases
5269 -- 5270Dongliang Liu, Mengying Han, Yu Tian, Linlin Gong, Cancan Jia, Pengli Cai, Weizhong Tu, Junni Chen, Qian-Nan Hu. Cell2Chem: mining explored and unexplored biosynthetic chemical spaces
5271 -- 5273René L. Warren, Inanç Birol. HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset