Journal: Bioinformatics

Volume 4, Issue 4

441 -- 443P. Taylor. A program for drawing evolutionary trees
445 -- 451François Major, R. Feldmann, Guy Lapalme, Robert Cedergren. FUS: a system to simulate conformational changes in biological macromolecules
453 -- 458Marie-Odile Delorme, Alain Hénaut. Merging of distance matrices and classification by dynamic clustering
459 -- 465R. Smith. A finite state machine algorithm for finding restriction sites and other pattern matching applications
467 -- 471K. Tajima. Multiple DNA and protein sequence alignment on a workstation and a supercomputer
473 -- 477Stavros J. Hamodrakas. A protein secondary structure prediction scheme for the IBM PC and compatibles
479 -- 482L. Menendez-Arias, J. Gomez-Gutierrez, M. Garcia-Ferrandez, A. Garcia-Tejedor, F. Moran. A BASIC microcomputer program to calculate the secondary structure of proteins from their circular dichroism spectrum
483 -- 486F. Dardel, P. Bensoussan. DNAid: a Macintosh full screen editor featuring a built-in regular expression interpreter for the search of specific patterns in biological sequences using finite state automata
487 -- 490R. J. Beynon. A Macintosh Hypercard stack for calculation of thermodynamically- corrected buffer recipes
491 -- 492W. Bains. AXE: a program for isolating short segments of long DNA sequences
493 -- 0J. Mandler. ANTIGEN: protein surface residue prediction

Volume 4, Issue 3

331 -- 335G. W. Kidder III. Resolution improvement by modulation of analog-to-digital converters
337 -- 344Shu-Yun Le, Jih-H. Chen, Ruth Nussinov, Jacob V. Maizel. An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors
345 -- 350D. R. Boswell. A program for template matching of protein sequences
351 -- 356Gilbert Deléage, F. F. Clerc, B. Roux, D. C. Gautheron. ANTHEPROT: a package for protein sequence analysis using a microcomputer
357 -- 365Olivier Gascuel, J. L. Golmard. A simple method for predicting the secondary structure of globular proteins: implications and accuracy
367 -- 371K. Nakata, M. Kanehisa, Jacob V. Maizel. Discriminant analysis of promoter regions in Escherichia coli sequences
381 -- 385Modesto Orozco, F. Javier Luque. POEMS: program for outliers elimination in multidimensional space
387 -- 393Bruce A. Shapiro. An algorithm for comparing multiple RNA secondary structures
395 -- 402A. H. Reisner, C. A. Bucholtz. The use of various properties of amino acids in color and monochrome dot-matrix analyses for protein homologies
407 -- 0C. Bergmann, R. Bergmann. SCATTER: a program to correct UV spectra recorded with an LKB Ultrospec interfaced to an Apple IIe for light scattering by particles or aggregates
408 -- 430J. M. Smith. CELLBASE: a database management system for the control of cell line storage

Volume 4, Issue 2

233 -- 238E. B. Moser, A. M. Saxton, J. P. Geaghan. Biological applications of the SAS system: an overview
243 -- 247K. Sirotkin. A computer program to display codon changes caused by mutagenesis
249 -- 252A. Mynett. FUGE: an analytical ultracentrifuge simulation for teaching purposes
253 -- 257J. L. Modelevsky, T. G. Akers. BCE: a tool for software integration
259 -- 264J. Campione-Piccardo. Algorithms for determining the fate of sites and domain boundaries in computer simulations of recombinant DNA procedures
265 -- 270Pasquale Petrilli. PROSOFT: a general purpose software in protein chemistry
271 -- 273C. D. Porter, A. G. Porter, L. C. Archard. BBC microcomputer controlled field inversion gel electrophoresis
275 -- 279J. D. Santangelo. A general purpose computer analysis system for chromatographic data
291 -- 295M. A. Fernandes, P. J. Jackman, S. A. Clark, S. R. Gunard. Detection and quantification of microorganisms in a heterogeneous foodstuff by image analysis
297 -- 302J. Mrazek, J. Kypr. Computer program Jamsek combining statistical and stereochemical rules for the prediction of protein secondary structure
303 -- 305Francesco Facchiano, Antonio Facchiano, R. Ragone, Giovanni Colonna. New graphic representation of structural parameters of proteins
307 -- 0Joaquín Dopazo. Reducing the effect of the data order in algorithms for constructing phylogenetic trees
308 -- 0J. L. Modelevsky, T. G. Akers. 3-D multi-variate data display tool as a protein design aid
309 -- 0J. Mandler. HYSTRUC: hydropathy and secondary structure prediction
310 -- 330J. Mandler. BETRA: a helpful tool for Beckman Microgenie users

Volume 4, Issue 1

3 -- 9R. E. Carhart, H. D. Cash, J. F. Moore. StrateGene: object-oriented programming in molecular biology
11 -- 17Eugene W. Myers, Webb Miller. Optimal alignments in linear space
19 -- 24Gad M. Landau, Uzi Vishkin, Ruth Nussinov. Locating alignments with k differences for nucleotide and amino acid sequences
25 -- 33C. B. Lawrence, D. A. Goldman. Definition and identification of homology domains
35 -- 40J. D. Hall, Eugene W. Myers. A software tool for finding locally optimal alignments in protein and nucleic acid sequences
41 -- 51Samuel Karlin, Macdonald Morris, G. Ghandour, M.-Y. Leung. Algorithms for identifying local molecular sequence features
53 -- 60Rodger Staden. Methods to define and locate patterns of motifs in sequences
61 -- 66Michael Gribskov, M. Homyak, J. Edenfield, David Eisenberg. Profile scanning for three-dimensional structural patterns in protein sequences
67 -- 71J. F. Collins, A. F. W. Coulson, A. Lyall. The significance of protein sequence similarities
73 -- 77J. Owens, D. Chatterjee, Ruth Nussinov, Andrzej K. Konopka, Jacob V. Maizel. A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features
79 -- 88U. Grob, K. Stuber. Recognition of ill-defined signals in nucleic acid sequences
89 -- 92Mauno Vihinen. An algorithm for simultaneous comparison of several sequences
93 -- 96Ulrich Melcher. A readable and space-efficient DNA sequence representation: application to caulimoviral DNAs
97 -- 101Lloyd Allison, Chut N. Yee. Restriction site mapping is in separation theory
103 -- 110Pierre Tufféry, Philippe Dessen, C. Mugnier, Serge A. Hazout. Restriction map construction using a complete sentences compatibility algorithm
111 -- 115B. Bellon. Construction of restriction maps
117 -- 123Trevor I. Dix, Dorota H. Kieronska. Errors between sites in restriction site mapping
125 -- 132J. Sulston, F. Mallett, Rodger Staden, R. Durbin, Terry Horsnell, A. Coulson. Software for genome mapping by fingerprinting techniques
133 -- 142Wilma K. Olson, Annankoil R. Srinivasan. The translation of DNA primary base sequence into three-dimensional structure
143 -- 146Robert Cedergren, Daniel Gautheret, Guy Lapalme, François Major. A secondary and tertiary structure editor for nucleic acids
147 -- 151R. K. Tan, M. Prabhakaran, C. S. Tung, Stephen C. Harvey. AUGUR: a program to predict, display and analyze the tertiary structure of B-DNA
153 -- 159Shu-Yun Le, Jih-H. Chen, Kathleen M. Currey, Jacob V. Maizel. A program for predicting significant RNA secondary structures
161 -- 166J. L. Modelevsky, T. G. Akers. Reiterative RNA folding and occupancy rate analysis for mRNA modelling
167 -- 173R. E. Bruccoleri, G. Heinrich. An improved algorithm for nucleic acid secondary structure display
175 -- 179R. J. Folz, J. I. Gordon. PARA-SITE: a computer algorithm for rapidly analyzing the physical- chemical properties of amino acid sequences at sites of co- and post- translational protein processing
181 -- 186B. A. Jameson, H. Wolf. The antigenic index: a novel algorithm for predicting antigenic determinants
187 -- 191H. Wolf, S. Modrow, M. Motz, B. A. Jameson, G. Hermann, B. Fortsch. An integrated family of amino acid sequence analysis programs
193 -- 196D. Shalloway, S. F. Sneddon, E. K. Little. Microcomputer-based three-dimensional stereoscopic macromolecular graphics display
203 -- 210T. P. Keenan, Stephen A. Krawetz. Computer video acquisition and analysis system for biological data
211 -- 0K. M. Williams. Version 5 of the Mount-Conrad-Myers Sequence Analysis Software Package now available
212 -- 0D. W. Smith. A complete, yet flexible, system for DNA/protein sequence analysis using VAX/VMS computers
213 -- 214T. Friedemann. Alignment of multiple DNA and protein sequence data
215 -- 216J. Campione-Piccardo, R. Moro. Modification of DNA ends and detection of restriction enzyme recognition sequences in their ligated junctions
217 -- 0Edmond J. Breen, Lois H. Browne, Len Glue, Keith L. Williams. The DNA rodent: a portable hand held DNA sequence reader
218 -- 232H. B. Jenson. Enhancement of DNA sequence computer programs by using digitized voice output