Journal: Bioinformatics

Volume 6, Issue 4

309 -- 318Bruce A. Shapiro, Kaizhong Zhang. Comparing multiple RNA secondary structures using tree comparisons
319 -- 324Yoshua Bengio, Yannick Pouliot. Efficient recognition of immunoglobulin domains from amino acid sequences using a neural network
325 -- 331Daniel Gautheret, François Major, Robert Cedergren. Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA
333 -- 342Krzysztof J. Cios, R. E. Freasier, Lucy S. Goodenday, L. T. Andrews. An expert system for diagnosis of coronary artery stenosis based on 201Tl scintigrams using the Dempster-Shafer theory of evidence
343 -- 346M. Dubnick, D. W. Mount. SPLICE, a computer program for automated extraction of information from GenBank sequence entries
347 -- 35Jürgen Kleffe, Uwe Langbecker. Exact computation of pattern probabilities in random sequences generated by Markov chains
355 -- 356Philippe Dessen, C. Fondrat, C. Valencien, C. Mugnier. BISANCE: a French service for access to biomolecular sequence databases
357 -- 363Graham J. L. Kemp, Peter M. D. Gray. Finding hydrophobic microdomains using an object-oriented database
365 -- 371S. Winker, Ross A. Overbeek, Carl R. Woese, Gary J. Olsen, N. Pfluger. Structure detection through automated covariance search
373 -- 381Xiaoqiu Huang, Ross C. Hardison, Webb Miller. A space-efficient algorithm for local similarities
383 -- 386N. Gautier, A. Pave. Object-centered representation for species systematics and identification in living systems in nature
387 -- 393Rodger Staden. An improved sequence handling package that runs on the Apple Macintosh
395 -- 398P. L. Mauri, M. Bitonti, M. Pace, P. G. Pietta, D. Agnellini. Automatic computation of enzyme kinetics by HPLC
399 -- 400W. Bains. A program to optimize DNA sequences for protein expression

Volume 6, Issue 3

165 -- 171I. E. Auger, C. E. Lawrence. Identification of the most significant amphipathic helix with application to HIV and MHV envelope proteins
173 -- 177T. H. Fischer, G. C. White II. The development of a high-order Taylor expansion solution to the chemical rate equation for the simulation of complex biochemical systems
189 -- 194Jeffrey I. Mechanick, Charles S. Peskin. A C version of Fourier-derived affinity spectrum analysis (FASA) to resolve binding heterogeneity
195 -- 204S. T. Ho, Lloyd Allison, Chut N. Yee. Restriction site mapping for three or more enzymes
205 -- 212K. Y. Jiang, J. Zheng, S. B. Higgins, D. M. Watterson, T. A. Craig, T. J. Lukas, L. J. Van Eldik. A knowledge-based experimental design system for nucleic acid engineering
213 -- 221Marc Eberhard. A set of programs for analysis of kinetic and equilibrium data
223 -- 228F. Blanca, C. Ferraz, J. Sri Widada, J. P. Liautard. Quantitative analysis of the selective pressure exerted on homologous proteins
229 -- 236A. Diaspro, P. Scelza, C. Nicolini. MUCIDS: an operative C environment for acquisition and processing of polarized-light scattered from biological specimens
237 -- 245Douglas L. Brutlag, Jean-Pierre Dautricourt, S. Maulik, J. Relph. Improved sensitivity of biological sequence database searches
247 -- 252Webb Miller, James Ostell, Kenneth E. Rudd. An algorithm for searching restriction maps
253 -- 261A. H. Reisner, C. A. Bucholtz, G. A. Bell, K. Tsui, D. Rosenfeld, Gabor T. Herman. Two- and three-dimensional image reconstructions from stained and autoradiographed histological sections
263 -- 270Chris A. Fields, C. A. Soderlund. gm: a practical tool for automating DNA sequence analysis
271 -- 277Pier Luigi Bellon, Salvatore Lanzavecchia. POLCA, a library running in a modern environment, implements a protocol for averaging randomly oriented images
279 -- 288Peter R. Sibbald, P. Argos. Scrutineer: a computer program that flexibly seeks and describes motifs and profiles in protein sequence databases [published erratum appears in Comput Appl Biosci 1990 Oct;6(4): 431]
289 -- 290Bruno Rossaro. Some programs useful for managing data in ecology, taxonomy and zoogeography
291 -- 292J. Mandler, S. Ludwig. SUBSIS: DNASIS/PROSIS subdirectory management
293 -- 295R. F. Mott, T. B. Kirkwood. STATSEARCH: a GCG-compatible program for assessing statistical significance during DNA and protein databank searches

Volume 6, Issue 2

63 -- 65R. Myers, S. Olsen, S. Maloy. Computer programs for the rapid determination of enzyme kinetics on MS- DOS compatible microcomputers
67 -- 69P. R. Hunter. A character separation index suitable for binary data containing equivocal responses
71 -- 80Alain Viari, Henry Soldano, E. Ollivier. A scale-independent signal processing method for sequence analysis
81 -- 92G. Z. Hertz, G. W. Hartzell III, Gary D. Stormo. Identification of consensus patterns in unaligned DNA sequences known to be functionally related
93 -- 99J. M. Smith, D. J. Thomas. Quantitative analysis of one-dimensional gel electrophoresis profiles
101 -- 105L. Menendez-Arias, R. Rodriguez. A BASIC microcomputer program for prediction of B and T cell epitopes in proteins
107 -- 111A. V. Grigorjev, Andrey A. Mironov. Mapping DNA by stochastic relaxation: a new approach to fragment sizes
113 -- 116Donald G. Gilbert. Two Hypercard calculators for molecular biology
117 -- 0Donald G. Gilbert. Dot plot sequence comparisons on Macintosh computers
118 -- 119Neil D. Rawlings, Alan J. Barrett. FLUSYS: a software package for the collection and analysis of kinetic and scanning data from Perkin-Elmer fluorimeters
120 -- 121Rainer Fuchs. Free molecular biological software available from the EMBL file server
122 -- 123G. W. Williams, G. P. Gibbs. Automatic updating of the EMBL database via EMBNet
124 -- 125C. G. Bridges. Olga--oligonucleotide primer design program for the Atari ST
126 -- 127J. H. Correia. Management of personal bibliographic reference using a simple database program
128 -- 130Pasquale Petrilli, Carlo Caporale, Ciro Sepe. PROLANG: an expandable software in protein chemistry

Volume 6, Issue 1

3 -- 5B. Henrissat, E. Raimbaud, V. Tran, J. P. Mornon. HCABAND: a computer program for the 2D-helical representation of protein sequences
7 -- 18Jih-H. Chen, Shu-Yun Le, Bruce A. Shapiro, Kathleen M. Currey, Jacob V. Maizel. A computational procedure for assessing the significance of RNA secondary structure
23 -- 28Hermann-Georg Holzhütter, Alfredo Colosimo. SIMFIT: a microcomputer software-toolkit for modelistic studies in biochemistry
43 -- 48G. M. Suboch, Yu. A. Sprizhitsky. Statistical significance of some complex nucleotide combinations: a comparison of DNA models
49 -- 50P. Wozniak, Wojciech Makalowski. Searching for tRNA genes in DNA sequences--an IBM microcomputer program
51 -- 53R. Myers, S. Olson, S. Maloy. Computer programs for the rapid determination of enzyme kinetics on MS- DOS compatible microcomputers
54 -- 0K. P. Fung, J. Lee. Basic program to assess the extent and pattern of agreement between two procedures
55 -- 56M. D. Atkinson, J. S. Heslop-Harrison. A simple method of hidden-line removal in three-dimensional modelling: hiding the problem behind filled polygons