Journal: Patterns

Volume 3, Issue 9

100551 -- 0Sumit Madan, Victoria Demina, Marcus Stapf, Oliver Ernst, Holger Fröhlich. Accurate prediction of virus-host protein-protein interactions via a Siamese neural network using deep protein sequence embeddings
100552 -- 0Griffin Chure, Rachel A. Banks, Avi I. Flamholz, Nicholas S. Sarai, Mason Kamb, Ignacio Lopez-Gomez, Yinon Bar-On, Ron Milo, Rob Phillips. Anthroponumbers.org: A quantitative database of human impacts on Planet Earth
100553 -- 0Xuhao Wan, Zhaofu Zhang, Wei Yu, Huan Niu, Xiting Wang, Yuzheng Guo. Machine-learning-assisted discovery of highly efficient high-entropy alloy catalysts for the oxygen reduction reaction
100561 -- 0Andrea Downing, Eric Perakslis. Health advertising on Facebook: Privacy and policy considerations
100562 -- 0Kirill Kryukov, Lihua Jin, So Nakagawa. Efficient compression of SARS-CoV-2 genome data using Nucleotide Archival Format
100565 -- 0Yun Hao, Joseph D. Romano, Jason H. Moore. Knowledge-guided deep learning models of drug toxicity improve interpretation
100567 -- 0Arjun Ghosh, Nanda Dulal Jana, Saurav Mallik, Zhongming Zhao. Designing optimal convolutional neural network architecture using differential evolution algorithm
100577 -- 0Matthew Amodio, Scott E. Youlten, Aarthi Venkat, Beatriz P. San Juan, Christine L. Chaffer, Smita Krishnaswamy. Single-cell multi-modal GAN reveals spatial patterns in single-cell data from triple-negative breast cancer
100584 -- 0Weixin Liang, Scott Elrod, Daniel A. McFarland, James Zou 0001. Systematic analysis of 50 years of Stanford University technology transfer and commercialization
100585 -- 0John Thomas, Pam Mantri. Design for financial sustainability
100586 -- 0Matthew J. Sniatynski, Bruce S. Kristal. Predicting drug toxicity at the intersection of informatics and biology: DTox builds a foundation
100587 -- 0Anahid Basiri, Chris Brunsdon. Missing data as data

Volume 3, Issue 8

100532 -- 0Lijia Wang, Xin Tong, Y. X. Rachel Wang. Statistics in everyone's backyard: An impact study via citation network analysis
100534 -- 0Kendra Albert, Maggie K. Delano. Sex trouble: Sex/gender slippage, sex confusion, and sex obsession in machine learning using electronic health records
100536 -- 0Meelad Amouzgar, David R. Glass, Reema Baskar, Inna Averbukh, Samuel C. Kimmey, Albert G. Tsai, Felix J. Hartmann, Sean Bendall. Supervised dimensionality reduction for exploration of single-cell data by HSS-LDA
100544 -- 0Markus Trengove, Emre Kazim, Denise R. S. Almeida, Airlie Hilliard, Sara Zannone, Elizabeth Lomas. A critical review of the Online Safety Bill
100545 -- 0Kilian Wenker. A systematic literature review on persuasive technology at the workplace
100546 -- 0Roni Barak Ventura, Manuel Ruiz Marín 0001, Maurizio Porfiri. A spatiotemporal model of firearm ownership in the United States
100547 -- 0Mark A. Hernandez, Shagun Modi, Kanisha Mittal, Pallavi Dwivedi, Quynh C. Nguyen, Nina L. Cesare, Elaine O. Nsoesie. Diet during the COVID-19 pandemic: An analysis of Twitter data
100555 -- 0Stefano Recanatesi, Serena Bradde, Vijay Balasubramanian, Nicholas A. Steinmetz, Eric Shea-Brown. A scale-dependent measure of system dimensionality
100563 -- 0Javad Rahimikollu, Jishnu Das. A supervised take on dimensionality reduction via hybrid subset selection
100564 -- 0James F. Campbell. Will drones revolutionize home delivery? Let's get real..
100568 -- 0Tomo Lazovich, Luca Belli, Aaron Gonzales, Amanda Bower, Uthaipon Tantipongpipat, Kristian Lum, Ferenc Huszár, Rumman Chowdhury. Measuring disparate outcomes of content recommendation algorithms with distributional inequality metrics
100569 -- 0Thiago A. Rodrigues, Jay Patrikar, Natalia L. Oliveira, H. Scott Matthews, Sebastian A. Scherer, Constantine Samaras. Drone flight data reveal energy and greenhouse gas emissions savings for very small package delivery
100570 -- 0Andrea H. Ramirez, Lina M. Sulieman, David J. Schlueter, Alese E. Halvorson, Jun Qian, Francis Ratsimbazafy, Roxana Loperena-Cortes, Kelsey R. Mayo, Melissa A. Basford, Nicole Deflaux, Karthik Muthuraman, Karthik Natarajan, Abel N. Kho, Hua Xu 0001, Consuelo H. Wilkins, Hoda Anton-Culver, Eric Boerwinkle, Mine Cicek, Cheryl R. Clark, Elizabeth Cohn, Lucila Ohno-Machado, Sheri D. Schully, Brian K. Ahmedani, Maria Argos, Robert M. Cronin, Christopher J. O'Donnell, Mona Fouad, David B. Goldstein, Philip Greenland, Scott J. Hebbring, Elizabeth W. Karlson, Parinda Khatri, Bruce Korf, Jordan W. Smoller, Stephen Sodeke, John Wilbanks, Justin Hentges, Stephen Mockrin, Christopher Lunt, Stephanie A. Devaney, Kelly Gebo, Joshua C. Denny, Robert J. Carroll, David Glazer, Paul A. Harris, George Hripcsak, Anthony Philippakis, Dan M. Roden. All of Us Research Program: Data quality, utility, and diversity
100571 -- 0Jonas Wahl. Where are all the guns? Modeling firearm ownership in the United States
100572 -- 0Ivan Specht, Kian Sani, Bryn C. Loftness, Curtis Hoffman, Gabrielle Gionet, Amy Bronson, John Marshall, Craig Decker, Landen Bailey, Tomi Siyanbade, Molly Kemball, Brett E. Pickett, William P. Hanage, Todd Brown, Pardis C. Sabeti, Andrés Colubri. Analyzing the impact of a real-life outbreak simulator on pandemic mitigation: An epidemiological modeling study
100573 -- 0Maggie K. Delano, Kendra Albert. Two researchers share how their cross disciplinary collaboration enables work to guide the future of data science
100574 -- 0David R. Glass, Meelad Amouzgar. Data science through the lens of systems immunology
100575 -- 0Debora Irene Christine, Mamello Thinyane. Citizen science as a data-based practice: A consideration of data justice
100576 -- 0Charlotte Freitag, Mike Berners-Lee, Kelly Widdicks, Bran Knowles, Gordon S. Blair, Adrian Friday. The real climate and transformative impact of ICT: A critique of estimates, trends, and regulations

Volume 3, Issue 7

100492 -- 0Paul Chong, Byung-Jun Yoon, Debbie Lai, Michael Carlson, Jarone Lee, Shuhan He. Looking back on forward-looking COVID models
100511 -- 0Jinjin Gu, Xinlei Wang, Chenang Li, Junhua Zhao 0001, Weijin Fu, Gaoqi Liang, Jing Qiu 0001. AI-enabled image fraud in scientific publications
100513 -- 0Jinwoo Leem, Laura S. Mitchell, James H. R. Farmery, Justin Barton, Jacob D. Galson. Deciphering the language of antibodies using self-supervised learning
100520 -- 0Ruiyang Liu, Yinghui Li, Linmi Tao, Dun Liang, Hai-Tao Zheng 0002. Are we ready for a new paradigm shift? A survey on visual deep MLP
100523 -- 0Sandhya Prabhakaran, Chandler Gatenbee, Mark Robertson-Tessi, Jeffrey West, Amer A. Beg, Jhanelle Gray, Scott Antonia, Robert A. Gatenby, Alexander R. A. Anderson. Mistic: An open-source multiplexed image t-SNE viewer
100524 -- 0Ilayda Beyreli, Oguzhan Karakahya, A. Ercüment Çiçek. DeepND: Deep multitask learning of gene risk for comorbid neurodevelopmental disorders
100526 -- 0Emre Kazim, Enzo Fenoglio, Airlie Hilliard, Adriano Soares Koshiyama, Catherine Mulligan, Markus Trengove, Abigail Gilbert, Arthur Gwagwa, Denise R. S. Almeida, Phil Godsiff, Kaska Porayska-Pomsta. sui generis value capture of new digital technologies: The case of AI
100530 -- 0Catherine D'Ignazio, Isadora Cruxên, Helena Suárez Val, Angeles Martinez Cuba, Mariel García-Montes, Silvana Fumega, Harini Suresh, Wonyoung So. Feminicide and counterdata production: Activist efforts to monitor and challenge gender-related violence
100531 -- 0Changyu Deng, Andrew Kim, Wei Lu. A generic battery-cycling optimization framework with learned sampling and early stopping strategies
100533 -- 0Malte Rørmose Damgaard, Rasmus Pedersen, Thomas Bak. Toward an idiomatic framework for cognitive robotics
100535 -- 0Yoonjoo Choi. Artificial intelligence for antibody reading comprehension: AntiBERTa
100537 -- 0Nina H. Di Cara, Natalie Zelenka, Huw Day, Euan D. S. Bennet, Vanessa Hanschke, Valerio Maggio, Ola Aleksandra Michalec, Charles Radclyffe, Roman Shkunov, Emma Tonkin, Zoë Turner, Kamilla Wells. Data Ethics Club: Creating a collaborative space to discuss data ethics
100543 -- 0Zhen Xu, Sergio Escalera, Adrien Pavão, Magali Richard, Wei-Wei Tu, Quanming Yao, Huan Zhao, Isabelle Guyon. Codabench: Flexible, easy-to-use, and reproducible meta-benchmark platform
100548 -- 0Rebecca Tooze. Navigating an early career in genomics and data science, written from the perspective of a current PhD student
100549 -- 0Sandhya Prabhakaran, Chandler Gatenbee, Alexander R. A. Anderson. Developing tools for analyzing and viewing multiplexed images

Volume 3, Issue 6

100489 -- 0Daswin De Silva, Damminda Alahakoon. An artificial intelligence life cycle: From conception to production
100494 -- 0Zhuo Wang, Wenhua Yang 0005, Linyan Xiang, Xiao Wang, Yingjie Zhao, Yaohong Xiao, Pengwei Liu, Yucheng Liu, Mihaela Banu, Oleg Zikanov, Lei Chen. Multi-input convolutional network for ultrafast simulation of field evolvement
100495 -- 0Andrew M. Lorrey, Petra R. Pearce, Rob Allan, Clive Wilkinson, John-Mark Woolley, Emily Judd, Stuart Mackay, Sudhir Rawhat, Laura Slivinski, Sally Wilkinson, Ed Hawkins, Patrick Quesnel, Gilbert P. Compo. Meteorological data rescue: Citizen science lessons learned from Southern Weather Discovery
100496 -- 0Sayoni Das, Krystyna Taylor, Simon Beaulah, Steve Gardner. Systematic indication extension for drugs using patient stratification insights generated by combinatorial analytics
100497 -- 0Yingjie Zhao, Jianshu Qin, Shijun Wang, ZhiPing Xu. Unraveling the morphological complexity of two-dimensional macromolecules
100498 -- 0Jiayi Pan, Heye Zhang, Weifei Wu, Zhifan Gao, Weiwen Wu. Multi-domain integrative Swin transformer network for sparse-view tomographic reconstruction
100506 -- 0Soumya Banerjee 0003, Phil Alsop, Linda Jones, Rudolf N. Cardinal. Patient and public involvement to build trust in artificial intelligence: A framework, tools, and case studies
100507 -- 0Tom Koch. Disease mapping and innovation: A history from wood-block prints to Web 3.0
100510 -- 0Bon Sy, Michael Wassil, Alisha Hassan, Jin Chen. Personalizing self-management via behavioral predictive analytics with health education for improved self-efficacy
100512 -- 0Ruhan Liu, Xiangning Wang, Qiang Wu, Ling Dai, Xi Fang, Tao Yan, Jaemin Son, Shiqi Tang, Jiang Li 0001, Zijian Gao, Adrian Galdran, J. M. Poorneshwaran, Hao Liu 0010, Jie Wang, Yerui Chen, Prasanna Porwal, Gavin Siew Wei Tan, Xiaokang Yang, Chao Dai, Haitao Song, Mingang Chen, Huating Li, Weiping Jia, Dinggang Shen, Bin Sheng, Ping Zhang. DeepDRiD: Diabetic Retinopathy - Grading and Image Quality Estimation Challenge
100521 -- 0Wei Zhu 0015, Jiebo Luo, Andrew D. White. Federated learning of molecular properties with graph neural networks in a heterogeneous setting
100522 -- 0Guobin Shen, Dongcheng Zhao, Yi Zeng 0001. Backpropagation with biologically plausible spatiotemporal adjustment for training deep spiking neural networks
100527 -- 0ZhiPing Xu. Physical scientist or a data scientist? A journey between disciplines
100528 -- 0Joyjit Chatterjee, Nina Dethlefs. Facilitating a smoother transition to renewable energy with AI
100529 -- 0Martin-Immanuel Bittner, Sahar Farajnia. AI in drug discovery: Applications, opportunities, and challenges

Volume 3, Issue 5

100468 -- 0Zhihan Lv, Liang Qiao 0003, Yuxi Li, Yong Yuan, Fei-Yue Wang 0001. BlockNet: Beyond reliable spatial Digital Twins to Parallel Metaverse
100471 -- 0Athanasios Tsanas. Relevance, redundancy, and complementarity trade-off (RRCT): A principled, generic, robust feature-selection tool
100472 -- 0Christopher Wiedeman, Ge Wang 0001. Disrupting adversarial transferability in deep neural networks
100473 -- 0Xin Bing, Tyler Lovelace, Florentina Bunea, Marten H. Wegkamp, Sudhir Pai Kasturi, Harinder Singh, Panayiotis V. Benos, Jishnu Das. Essential Regression: A generalizable framework for inferring causal latent factors from multi-omic datasets
100474 -- 0Weiwen Wu, Dianlin Hu, Wenxiang Cong, Hongming Shan, Shaoyu Wang, Chuang Niu, Pingkun Yan, Hengyong Yu, Varut Vardhanabhuti, Ge Wang 0001. Stabilizing deep tomographic reconstruction: Part A. Hybrid framework and experimental results
100475 -- 0Weiwen Wu, Dianlin Hu, Wenxiang Cong, Hongming Shan, Shaoyu Wang, Chuang Niu, Pingkun Yan, Hengyong Yu, Varut Vardhanabhuti, Ge Wang 0001. Stabilizing deep tomographic reconstruction: Part B. Convergence analysis and adversarial attacks
100476 -- 0Rachel L. Thomas, David Uminsky 0001. Reliance on metrics is a fundamental challenge for AI
100483 -- 0Amy P. K. Nelson, Robert J. Gray, James K. Ruffle, Henry C. Watkins, Daniel Herron, Nick Sorros, Danil Mikhailov, M. Jorge Cardoso, Sébastien Ourselin, Nick McNally, Bryan Williams, Geraint E. Rees, Parashkev Nachev. Deep forecasting of translational impact in medical research
100484 -- 0Weiqing Min, Chunlin Liu, Leyi Xu, Shuqiang Jiang. Applications of knowledge graphs for food science and industry
100485 -- 0Hu Chen 0002, Che Sun, Peixi Liao, Yancun Lai, Fei Fan, Yi Lin 0006, Zhenhua Deng, Yi Zhang 0018. A fine-grained network for human identification using panoramic dental images
100487 -- 0Sinem Sav, Jean-Philippe Bossuat, Juan Ramón Troncoso-Pastoriza, Manfred Claassen, Jean-Pierre Hubaux. Privacy-preserving federated neural network learning for disease-associated cell classification
100491 -- 0Sadman Sadeed Omee, Steph-Yves M. Louis, Nihang Fu, Lai Wei, Sourin Dey, Rongzhi Dong, Qinyang Li, Jianjun Hu. Scalable deeper graph neural networks for high-performance materials property prediction
100493 -- 0Sanjoy Dey, Prithwish Chakraborty, Bum chul Kwon, Amit Dhurandhar, Mohamed F. Ghalwash, Fernando J. Suarez Saiz, Kenney Ng, Daby Sow, Kush R. Varshney, Pablo Meyer 0001. Human-centered explainability for life sciences, healthcare, and medical informatics
100508 -- 0Amy P. K. Nelson. Reframing research impact
100509 -- 0Liansheng Wang, Lianyu Zhou, Wenxian Yang, Rongshan Yu. Deepfakes: A new threat to image fabrication in scientific publications?

Volume 3, Issue 4

100441 -- 0Thai-Hoang Pham, Yue Qiu, Jiahui Liu, Steven Zimmer, Eric E. O'Neill, Lei Xie 0006, Ping Zhang 0016. Chemical-induced gene expression ranking and its application to pancreatic cancer drug repurposing
100445 -- 0Tianfan Fu, Kexin Huang, Cao Xiao, Lucas M. Glass, Jimeng Sun. HINT: Hierarchical interaction network for clinical-trial-outcome predictions
100451 -- 0Alex Rogozhnikov, Pavan Ramkumar, Rishi Bedi, Saul Kato, G. Sean Escola. Hierarchical confounder discovery in the experiment-machine learning cycle
100452 -- 0Yilin Ning, Marcus Eng Hock Ong, Bibhas Chakraborty, Benjamin Alan Goldstein, Daniel Shu Wei Ting, Roger Vaughan, Nan Liu 0003. Shapley variable importance cloud for interpretable machine learning
100453 -- 0Takoua Khorchani, Yojana Gadiya, Gesa Witt, Delia Lanzillotta, Carsten Claussen, Andrea Zaliani. SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data
100455 -- 0John Zerilli, Umang Bhatt, Adrian Weller. How transparency modulates trust in artificial intelligence
100462 -- 0Arthur Gwagwa, Emre Kazim, Airlie Hilliard. The role of the African value of Ubuntu in global AI inclusion discourse: A normative ethics perspective
100464 -- 0Liuyin Chen, Haoyang Qi, Di Lu, Jianxue Zhai, Kaican Cai, Long Wang 0015, Guoyuan Liang, Zijun Zhang. Machine vision-assisted identification of the lung adenocarcinoma category and high-risk tumor area based on CT images
100467 -- 0Jakob Ohme, Theo B. Araujo. Digital data donations: A quest for best practices
100469 -- 0Matthias Braun 0006, Jenny Krutzinna. Digital twins and the ethics of health decision-making concerning children
100470 -- 0Takaaki Masuda, Koshi Mimori. Artificial intelligence-assisted drug repurposing via "chemical-induced gene expression ranking"
100482 -- 0Caspar J. van Lissa, Wolfgang Stroebe, Michelle R. vanDellen, N. Pontus Leander, Maximilian Agostini, Tim Draws, Andrii Grygoryshyn, Ben Gützgow, Jannis Kreienkamp, Clara S. Vetter, Georgios Abakoumkin, Jamilah Hanum Abdul Khaiyom, Vjolica Ahmedi, Handan Akkas, Carlos A. Almenara, Mohsin Atta, Sabahat Cigdem Bagci, Sima Basel, Edona Berisha Kida, Allan B. I. Bernardo, Nicholas R. Buttrick, Phatthanakit Chobthamkit, Hoon-Seok Choi, Mioara Cristea, Sára Csaba, Kaja Damnjanovic, Ivan Danyliuk, Arobindu Dash, Daniela Di Santo, Karen M. Douglas, Violeta Enea, Daiane Gracieli Faller, Gavan J. Fitzsimons, Alexandra Gheorghiu, Ángel Gómez, Ali Hamaidia, Qing Han, Mai Helmy, Joevarian Hudiyana, Bertus F. Jeronimus, Ding-Yu Jiang, Veljko Jovanovic, Zeljka Kamenov, Anna Kende, Shian-Ling Keng, Tra Thi Thanh Kieu, Yasin Koc, Kamila Kovyazina, Inna Kozytska, Joshua Krause, Arie W. Kruglanksi, Anton Kurapov, Maja Kutlaca, Nóra Anna Lantos, Edward P. Lemay, Cokorda Bagus Jaya Lesmana, Winnifred R. Louis, Adrian Lueders, Najma Iqbal Malik, Anton P. Martinez, Kira O. McCabe, Jasmina Mehulic, Mirra Noor Milla, Idris Mohammed, Erica Molinario, Manuel Moyano, Hayat Muhammad, Silvana Mula, Hamdi Muluk, Solomiia Myroniuk, Reza Najafi, Claudia F. Nisa, Boglárka Nyúl, Paul A. O'Keefe, Jose Javier Olivas Osuna, Evgeny N. Osin, Joonha Park, Gennaro Pica, Antonio Pierro, Jonas H. Rees, Anne Margit Reitsema, Elena Resta, Marika Rullo, Michelle K. Ryan, Adil Samekin, Pekka Santtila, Edyta M. Sasin, Birga M. Schumpe, Heyla A. Selim, Michael Vicente Stanton, Samiah Sultana, Robbie M. Sutton, Eleftheria Tseliou, Akira Utsugi, Jolien Anne van Breen, Kees van Veen, Alexandra Vázquez, Robin Wollast, Victoria Wai-lan Yeung, Somayeh Zand, Iris Lav Zezelj, Bang Zheng, Andreas Zick, Claudia Zuniga, Jocelyn J. Bélanger. Using machine learning to identify important predictors of COVID-19 infection prevention behaviors during the early phase of the pandemic
100486 -- 0Kunal Khadilkar, Ashiqur R. KhudaBukhsh, Tom M. Mitchell. Gender bias, social bias, and representation in Bollywood and Hollywood
100488 -- 0Amalie Trewartha, Nicholas Walker, Haoyan Huo, Sanghoon Lee, Kevin Cruse, John Dagdelen, Alexander Dunn, Kristin A. Persson, Gerbrand Ceder, Anubhav Jain. Quantifying the advantage of domain-specific pre-training on named entity recognition tasks in materials science
100490 -- 0Pavan Ramkumar, Saul Kato, G. Sean Escola. Data science, human intelligence, and therapeutics discovery: An interview with Sean Escola, Saul Kato, and Pavan Ramkumar

Volume 3, Issue 3

100423 -- 0Jon Zelner, Kelly Broen, Ella August. A guide to backward paper writing for the data sciences
100424 -- 0Shanshan Jia 0001, Xingyi Li, Tiejun Huang 0001, Jian K. Liu, Zhaofei Yu. Representing the dynamics of high-dimensional data with non-redundant wavelets
100427 -- 0Matthias Braun 0006, Patrik Hummel. Data justice and data solidarity
100428 -- 0Omar Maddouri, Xiaoning Qian, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon. Robust importance sampling for error estimation in the context of optimal Bayesian transfer learning
100433 -- 0Vanessa Lage-Rupprecht, Bruce Schultz, Justus Dick, Marcin Namysl, Andrea Zaliani, Stephan Gebel, Ole Pless, Jeanette Reinshagen, Bernhard Ellinger, Christian Ebeling, Alexander M. Esser, Marc Jacobs 0001, Carsten Claussen, Martin Hofmann-Apitius. A hybrid approach unveils drug repurposing candidates targeting an Alzheimer pathophysiology mechanism
100434 -- 0Daniel Osório 0004, Yan Zhong, Guanxun Li, Qian Xu, Yongjian Yang, Yanan Tian, Robert S. Chapkin, Jianhua Z. Huang, James J. Cai. scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation
100435 -- 0Zhi-Wen, Guido Powell, Imane Chafi, David L. Buckeridge, Yue Li. Inferring global-scale temporal latent topics from news reports to predict public health interventions for COVID-19
100440 -- 0Yating Lin, Haojun Li, Xu Xiao, Lei Zhang, Kejia Wang, Jingbo Zhao, Minshu Wang, Frank Zheng, Minwei Zhang, Wenxian Yang, Jiahuai Han, Rongshan Yu. in silico data augmentation and deep neural networks
100443 -- 0Eric M. Johnson, William L. Kath, Madhav Mani. EMBEDR: Distinguishing signal from noise in single-cell omics data
100444 -- 0Laura Boeschoten, Adriënne Mendrik, Emiel van der Veen, Jeroen Vloothuis, Haili Hu, Roos Voorvaart, Daniel L. Oberski. Privacy-preserving local analysis of digital trace data: A proof-of-concept
100449 -- 0Yen-Chia Hsu, Ting-Hao Kenneth Huang, Himanshu Verma, Andrea Mauri 0001, Illah R. Nourbakhsh, Alessandro Bozzon. Empowering local communities using artificial intelligence
100450 -- 0Arun Mannodi-Kanakkithodi, Xiaofeng Xiang, Laura Jacoby, Robert Biegaj, Scott T. Dunham, Daniel R. Gamelin, Maria K. Y. Chan. Universal machine learning framework for defect predictions in zinc blende semiconductors
100454 -- 0Yash Amonkar, David J. Farnham, Upmanu Lall. A k-nearest neighbor space-time simulator with applications to large-scale wind and solar power modeling
100463 -- 0Shanshan Jia 0001, Zhaofei Yu. Zooming in on the brain via data science
100465 -- 0Xiaoru Dong, Rhonda Bacher. Data-driven assessment of dimension reduction quality for single-cell omics data
100466 -- 0Vanessa Lage-Rupprecht, Bruce Schultz, Marcin Namysl. A hybrid approach for identifying drug repurposing candidates and their mechanisms: An interview with Vanessa Lage-Rupprecht and two co-authors

Volume 3, Issue 2

100399 -- 0Mustafa Umit Oner, Jianbin Chen, Egor Revkov, Anne James, Seow Ye Heng, Arife Neslihan Kaya, Jacob Josiah Santiago Alvarez, Angela Takano, Xin Min Cheng, Tony Kiat Hon Lim, Daniel Shao-Weng Tan, Weiwei Zhai, Anders Jacobsen Skanderup, Wing-Kin Sung, Hwee Kuan Lee. Obtaining spatially resolved tumor purity maps using deep multiple instance learning in a pan-cancer study
100406 -- 0Jeffrey A. Ruffolo, Jeremias Sulam, Jeffrey J. Gray. Antibody structure prediction using interpretable deep learning
100407 -- 0Jonathan J. Park, Sidi Chen. Metaviromic identification of discriminative genomic features in SARS-CoV-2 using machine learning
100409 -- 0Kunal Khadilkar, Ashiqur R. KhudaBukhsh, Tom M. Mitchell. Hollywood
100410 -- 0Dimitris Spathis, Ignacio Perez-Pozuelo, Laia Marques-Fernandez, Cecilia Mascolo. Breaking away from labels: The promise of self-supervised machine learning in intelligent health
100414 -- 0Lam-Ha Ly, Martin Vingron. Effect of imputation on gene network reconstruction from single-cell RNA-seq data
100415 -- 0Matthew J. Sniatynski, John A. Shepherd, Thomas Ernst, Lynne R. Wilkens, D. Frank Hsu, Bruce S. Kristal. accuracy
100421 -- 0Chinasa T. Okolo. Optimizing human-centered AI for healthcare in the Global South
100425 -- 0Mona Sloane, Emanuel Moss, Rumman Chowdhury. A Silicon Valley love triangle: Hiring algorithms, pseudo-science, and the quest for auditability
100432 -- 0Marui Li, Chaoyu Dong, Yunfei Mu, Xiaodan Yu, Qian Xiao, Hongjie Jia. Data-model alliance network for the online multi-step thermal warning of energy storage system based on surface temperature diffusion
100442 -- 0Kunal Khadilkar, Ashiqur R. KhudaBukhsh, Tom M. Mitchell. Hollywood
100446 -- 0Austin Clyde. AI for science and global citizens
100447 -- 0Mustafa Umit Oner, Wing-Kin Sung, Hwee Kuan Lee. Oner, Sung, and Lee: Researchers in digital pathology for the future of modern medicine
100448 -- 0Artur Yakimovich. Sequencing meets machine learning to fight emerging pathogens: A preview

Volume 3, Issue 12

100612 -- 0Ioannis Tsamardinos. Don't lose samples to estimation
100616 -- 0Shuo Liu, Adria Mallol-Ragolta, Emilia Parada-Cabaleiro, Kun Qian 0003, Xin Jing, Alexander Kathan, Bin Hu 0001, Björn W. Schuller. Audio self-supervised learning: A survey
100625 -- 0Arnab Kabiraj, Tripti Jain, Santanu Mahapatra. Massive Monte Carlo simulations-guided interpretable learning of two-dimensional Curie temperature
100627 -- 0Dolzodmaa Davaasuren, Yintong Chen, Leila Jaafar, Rayna Marshall, Angelica L. Dunham, Charles T. Anderson, James Z. Wang 0001. Automated 3D segmentation of guard cells enables volumetric analysis of stomatal biomechanics
100628 -- 0Jiahua Rao, Shuangjia Zheng, Yutong Lu, Yuedong Yang. Quantitative evaluation of explainable graph neural networks for molecular property prediction
100632 -- 0Erin Connelly, Christina Lee, Jessica Furner-Pardoe, Charo I. Del Genio, Freya Harrison. A case study of the Ancientbiotics collaboration
100634 -- 0David A. Santos, Justin L. Andrews, Binbin Lin, Luis R. De Jesus, Yuting Luo, Savannah Pas, Michelle A. Gross, Luis Carillo, Peter Stein, Yu Ding, Bai-Xiang Xu, Sarbajit Banerjee. Multivariate hyperspectral data analytics across length scales to probe compositional, phase, and strain heterogeneities in electrode materials
100635 -- 0Marko Tesic, Ulrike Hahn. Can counterfactual explanations of AI systems' predictions skew lay users' causal intuitions about the world? If so, can we correct for that?
100639 -- 0Abdullahi Ali, Nasir Ahmad, Elgar de Groot, Marcel A. J. van Gerven, Tim Christian Kietzmann. Predictive coding is a consequence of energy efficiency in recurrent neural networks
100640 -- 0Le Xie, Tong Huang, Xiangtian Zheng, Yan Liu 0002, Mengdi Wang, Vijay Vittal, P. R. Kumar 0001, Srinivas Shakkottai, Yi Cui. Energy system digitization in the era of AI: A three-layered approach toward carbon neutrality
100642 -- 0Mustafa Umit Oner, Mei-Ying Ng, Danilo Medina Giron, Cecilia Ee Chen Xi, Louis Ang Yuan Xiang, Malay Singh, Weimiao Yu, Wing-Kin Sung, Chin Fong Wong, Hwee Kuan Lee. An AI-assisted tool for efficient prostate cancer diagnosis in low-grade and low-volume cases
100653 -- 0Jiahua Rao, Shuangjia Zheng, Yuedong Yang. Integrating supercomputing and artificial intelligence for life science
100654 -- 0Aashutosh Mistry, Venkat Srinivasan. Machine learning accelerates identification of lithiated phases in X-ray images of battery hosts
100655 -- 0Ivana Maric, Kévin Contrepois, Mira N. Moufarrej, Ina A. Stelzer, Dorien Feyaerts, Xiaoyuan Han, Andy Tang, Natalie Stanley, Ronald J. Wong, Gavin M. Traber, Mathew Ellenberger, Alan L. Chang, Ramin Fallahzadeh, Huda Nassar, Martin Becker 0003, Maria Xenochristou, Camilo Espinosa, Davide De Francesco, Mohammad S. Ghaemi, Elizabeth K. Costello, Anthony Culos, Xuefeng Bruce Ling, Karl G. Sylvester, Gary L. Darmstadt, Virginia D. Winn, Gary M. Shaw, David A. Relman, Stephen R. Quake, Martin S. Angst, Michael P. Snyder, David K. Stevenson, Brice Gaudilliere, Nima Aghaeepour. Early prediction and longitudinal modeling of preeclampsia from multiomics
100656 -- 0Holger Engleitner, Ashwani Jha, Marta Suarez-Pinilla, Amy P. K. Nelson, Daniel Herron, Geraint Rees 0001, Karl J. Friston, Martin Rossor, Parashkev Nachev. GeoSPM: Geostatistical parametric mapping for medicine
100660 -- 0David A. Santos, Binbin Lin, Justin L. Andrews. Data science enables X-ray vision
100661 -- 0Shahab Bakhtiari. Energy efficiency as a normative account for predictive coding

Volume 3, Issue 11

100601 -- 0Mauro Lombardi, Simone Vannuccini. Understanding emerging patterns and dynamics through the lenses of the cyber-physical universe
100602 -- 0Zhe S. Chen 0001, Prathamesh Kulkarni, Isaac R. Galatzer-Levy, Benedetta Bigio, Carla Nasca, Yu Zhang 0009. Modern views of machine learning for precision psychiatry
100603 -- 0Zexi Li, Feng Mao, Chao Wu. Can we share models if sharing data is not an option?
100605 -- 0Tian Xing, Hu Yan, Kailai Sun, Yifan Wang, Xuetao Wang, Qianchuan Zhao. Honeycomb: An open-source distributed system for smart buildings
100608 -- 0Serena Oduro, Emanuel Moss, Jacob Metcalf. Obligations to assess: Recent trends in AI accountability regulations
100609 -- 0Yang Liu, Haiyou Huang, Jie Yuan, Yan Zhang, Hongyuan Feng, Ning Chen, Yang Li, Jiao Teng, Kui Jin, Dezhen Xue, Yanjing Su. Upper limit of the transition temperature of superconducting materials
100610 -- 0Waheed Miran, Wenyuan Huang, Xizi Long, Gaku Imamura, Akihiro Okamoto. Multivariate landscapes constructed by Bayesian estimation over five hundred microbial electrochemical time profiles
100611 -- 0Feifei Zhao, Yi Zeng 0001, Bing Han, Hongjian Fang, Zhuoya Zhao. Nature-inspired self-organizing collision avoidance for drone swarm based on reward-modulated spiking neural network
100613 -- 0Qing Lyu 0003, Sanjeev V. Namjoshi, Emory McTyre, Umit Topaloglu, Richard Barcus, Michael D. Chan, Christina K. Cramer, Waldemar Debinski, Metin N. Gurcan, Glenn J. Lesser, Hui-Kuan Lin, Reginald F. Munden, Boris C. Pasche, Kiran Kumar Solingapuram Sai, Roy E. Strowd, Stephen B. Tatter, Kounosuke Watabe, Wei Zhang, Ge Wang 0001, Christopher T. Whitlow. A transformer-based deep-learning approach for classifying brain metastases into primary organ sites using clinical whole-brain MRI images
100614 -- 0Qiang Cui, Yi-lin Lei, Ye Li. Potential carbon emissions reduction from fleet schedule reconfiguration of China's and India's external routes
100615 -- 0Andrea Pitzus, Simone Romeni, Fabio Vallone, Silvestro Micera. A method to establish functional vagus nerve topography from electro-neurographic spontaneous activity
100617 -- 0David Murrugarra, Alan Veliz-Cuba. An information theoretic approach for the inference of Boolean networks and functions from data: BoCSE
100629 -- 0Ben Wagner, Claudia Müller-Birn. Responsible and accountable data science
100630 -- 0Turab Lookman, Alejandro Lopez-Bezanilla. What can data science tell us about finding new superconductors?
100631 -- 0Jie Sun, Abd AlRahman R. AlMomani, Erik M. Bollt. Data-driven learning of Boolean networks and functions by optimal causation entropy principle
100637 -- 0Waheed Miran, Gaku Imamura, Akihiro Okamoto. Architecting data-driven microbial electrochemistry from scratch
100638 -- 0Steve Cranford. Navigating the "Kessel Run" of digital materials acceleration

Volume 3, Issue 10

100550 -- 0Henry Cope, Craig R. G. Willis, Matthew J. MacKay, Lindsay Rutter, Li Shean Toh, Philip M. Williams, Raúl Herranz, Joseph Borg, Daniela Bezdan, Stefania Giacomello, Masafumi Muratani, Christopher E. Mason, Timothy Etheridge, Nathaniel J. Szewczyk. Routine omics collection is a golden opportunity for European human research in space and analog environments
100554 -- 0Peter Ward, Geraint A. Tarling, Petra Ten Hoopen. A database of zooplankton abundance in the Atlantic sectors of the Southern and sub-Arctic Oceans
100566 -- 0Petra Ten Hoopen, Helen J. Peat, Peter Ward, Geraint A. Tarling. Polar biodiversity data: From a national marine platform to a global data portal
100588 -- 0Mario Krenn, Qianxiang Ai, Senja Barthel, Nessa Carson, Angelo Frei, Nathan C. Frey, Pascal Friederich, Théophile Gaudin, Alberto Alexander Gayle, Kevin Maik Jablonka, Rafael F. Lameiro, Dominik Lemm, Alston Lo, Seyed Mohamad Moosavi, José Manuel Nápoles-Duarte, AkshatKumar Nigam, Robert Pollice, Kohulan Rajan, Ulrich Schatzschneider, Philippe Schwaller, Marta Skreta, Berend Smit, Felix Strieth-Kalthoff, Chong Sun, Gary Tom, Guido Falk von Rudorff, Andrew Wang, Andrew D. White, Adamo Young, Rose Yu, Alán Aspuru-Guzik. SELFIES and the future of molecular string representations
100589 -- 0Aldo Glielmo, Iuri Macocco, Diego Doimo, Matteo Carli, Claudio Zeni, Romina Wild, Maria d'Errico, Alex Rodriguez, Alessandro Laio. DADApy: Distance-based analysis of data-manifolds in Python
100590 -- 0Jia Lu, Ryan Tsoi, Nan Luo, Yuanchi Ha, Shangying Wang, Minjun Kwak, Yasa Baig, Nicole Moiseyev, Shari Tian, Alison Zhang, Neil Zhenqiang Gong, Lingchong You. Distributed information encoding and decoding using self-organized spatial patterns
100591 -- 0Christoph Kern, Frederic Gerdon, Ruben L. Bach, Florian Keusch, Frauke Kreuter. Humans versus machines: Who is perceived to decide fairer? Experimental evidence on attitudes toward automated decision-making
100592 -- 0Zhanping Zhou, Chenyang Zhao, Hui Qiao, Ming Wang, Yuchen Guo, Qian Wang, Rui Zhang, Huaiyu Wu, Fajin Dong, Zhenhong Qi, Jianchu Li, Xinping Tian, Xiaofeng Zeng, Yuxin Jiang, Feng Xu, Qionghai Dai, Meng Yang. RATING: Medical knowledge-guided rheumatoid arthritis assessment from multimodal ultrasound images via deep learning
100600 -- 0Ola Hall, Mattias Ohlsson, Thorsteinn S. Rögnvaldsson. A review of explainable AI in the satellite data, deep machine learning, and human poverty domain
100604 -- 0Isabelle Fest, Maranke Wieringa, Ben Wagner. Paper vs. practice: How legal and ethical frameworks influence public sector data professionals in the Netherlands
100606 -- 0Rafael Vescovi, Ryan Chard, Nickolaus Saint, Ben Blaiszik, Jim Pruyne, Tekin Bicer, Alex Lavens, Zhengchun Liu, Michael E. Papka, Suresh Narayanan, Nicholas Schwarz, Kyle Chard, Ian T. Foster. Linking scientific instruments and computation: Patterns, technologies, and experiences
100607 -- 0Isabelle Fest, Maranke Wieringa, Ben Wagner. Responsible data science is a responsibility for all

Volume 3, Issue 1

100371 -- 0Hanrui Zhang, Xueqing Wang, Hongyang Li, Soham Mehendale, Yuanfang Guan. Auto-annotating sleep stages based on polysomnographic data
100380 -- 0Styliani Kleanthous, Maria Kasinidou, Pinar Barlas, Jahna Otterbacher. Perception of fairness in algorithmic decisions: Future developers' perspective
100391 -- 0Alex Volinski, Yuval Zaidel, Albert Shalumov, Travis Dewolf, Lazar Supic, Elishai Ezra Tsur. Data-driven artificial and spiking neural networks for inverse kinematics in neurorobotics
100392 -- 0Marzyeh Ghassemi, Elaine O. Nsoesie. In medicine, how do we machine learn anything real?
100395 -- 0Somya D. Mohanty, Deborah Lekan, Thomas P. McCoy, Marjorie Jenkins, Prashanti Manda. Machine learning for predicting readmission risk among the frail: Explainable AI for healthcare
100396 -- 0Suzana de Siqueira Santos, Mateo Torres, Diego Galeano, María del Mar Sánchez, Luca Cernuzzi, Alberto Paccanaro. Machine learning and network medicine approaches for drug repositioning for COVID-19
100398 -- 0Francine Berman, Emilia Cabrera, Ali Jebari, Wassim Marrakchi. The impact universe - a framework for prioritizing the public interest in the Internet of Things
100400 -- 0Pratham N. Soni, Siyu Shi, Pranav R. Sriram, Andrew Y. Ng, Pranav Rajpurkar. Contrastive learning of heart and lung sounds for label-efficient diagnosis
100408 -- 0Nan Wu, Léonie Strömich, Sophia N. Yaliraki. Prediction of allosteric sites and signaling: Insights from benchmarking datasets
100412 -- 0Michèle Ramsay. African genomic data sharing and the struggle for equitable benefit
100413 -- 0Elishai Ezra Tsur, Travis Dewolf, Lazar Supic. Walking on the thin intersectional lines of disciplines
100422 -- 0Olivier Jutel. Blockchain humanitarianism and crypto-colonialism
100426 -- 0Christian Matek. More than just sound: Harnessing metadata to improve neural network classifiers for medical auscultation
100429 -- 0Rui B. Chang. A journey toward artificial intelligence-assisted automated sleep scoring