Journal: PLoS Computational Biology

Volume 9, Issue 10

0 -- 0Ramakrishnan Iyer, Vilas Menon, Michael Buice, Christof Koch, Stefan Mihalas. The Influence of Synaptic Weight Distribution on Neuronal Population Dynamics
0 -- 0Maryam Modir Shanechi, Jessica J. Chemali, Max Liberman, Ken Solt, Emery N. Brown. A Brain-Machine Interface for Control of Medically-Induced Coma
0 -- 0Sven-Eric Schelhorn, Matthias Fischer, Laura Tolosi, Janine Altmüller, Peter Nürnberg, Herbert Pfister, Thomas Lengauer, Frank Berthold. Sensitive Detection of Viral Transcripts in Human Tumor Transcriptomes
0 -- 0Evan S. Schaffer, Srdjan Ostojic, L. F. Abbott. A Complex-Valued Firing-Rate Model That Approximates the Dynamics of Spiking Networks
0 -- 0Julien Racle, Flora Picard, Laurence Girbal, Muriel Cocaign-Bousquet, Vassily Hatzimanikatis. Lactococcus lactis Translation Data
0 -- 0Guilhem Faure, Isabelle Callebaut. Comprehensive Repertoire of Foldable Regions within Whole Genomes
0 -- 0Mu Gao, Jeffrey Skolnick. A Comprehensive Survey of Small-Molecule Binding Pockets in Proteins
0 -- 0Gabriel Rosser, Alexander G. Fletcher, David A. Wilkinson, Jennifer A. de Beyer, Christian A. Yates, Judith P. Armitage, Philip K. Maini, Ruth E. Baker. Rhodobacter sphaeroides
0 -- 0Yuri Pritykin, Mona Singh. Simple Topological Features Reflect Dynamics and Modularity in Protein Interaction Networks
0 -- 0Antreas C. Kalli, Iain D. Campbell, Mark S. P. Sansom. Conformational Changes in Talin on Binding to Anionic Phospholipid Membranes Facilitate Signaling by Integrin Transmembrane Helices
0 -- 0Daniel B. Larremore, Aaron Clauset, Caroline O. Buckee. A Network Approach to Analyzing Highly Recombinant Malaria Parasite Genes
0 -- 0Omar Hadzipasic, James O. Wrabl, Vincent J. Hilser. A Horizontal Alignment Tool for Numerical Trend Discovery in Sequence Data: Application to Protein Hydropathy
0 -- 0Terry Lohrenz, Meghana Bhatt, Nathan Apple, P. Read Montague. Keeping up with the Joneses: Interpersonal Prediction Errors and the Correlation of Behavior in a Tandem Sequential Choice Task
0 -- 0Tyler Drake, Dimitrios Vavylonis. Model of Fission Yeast Cell Shape Driven by Membrane-Bound Growth Factors and the Cytoskeleton
0 -- 0Kate A. Stafford, Paul Robustelli, Arthur G. Palmer III. Thermal Adaptation of Conformational Dynamics in Ribonuclease H
0 -- 0Thomas Hannagan, Jonathan Grainger. The Lazy Visual Word Form Area: Computational Insights into Location-Sensitivity
0 -- 0Ricardo Aguas, Neil M. Ferguson. Feature Selection Methods for Identifying Genetic Determinants of Host Species in RNA Viruses
0 -- 0Sushmita Roy, Stephen Lagree, Zhonggang Hou, James A. Thomson, Ron M. Stewart, Audrey P. Gasch. Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks
0 -- 0Giovanna De Palo, Robert G. Endres. Unraveling Adaptation in Eukaryotic Pathways: Lessons from Protocells
0 -- 0Asif M. Khan, Tin Wee Tan, Christian Schönbach, Shoba Ranganathan. APBioNet - Transforming Bioinformatics in the Asia-Pacific Region
0 -- 0Hanna Julienne, Azedine Zoufir, Benjamin Audit, Alain Arneodo. Human Genome Replication Proceeds through Four Chromatin States
0 -- 0Lennart Hilbert, Genevieve Bates, Horia N. Roman, Jenna L. Blumenthal, Nedjma B. Zitouni, Apolinary Sobieszek, Michael C. Mackey, Anne-Marie Lauzon. Molecular Mechanical Differences between Isoforms of Contractile Actin in the Presence of Isoforms of Smooth Muscle Tropomyosin
0 -- 0Shuguang Yuan, Rongliang Wu, Dorota Latek, Bartosz Trzaskowski, Slawomir Filipek. 1 Activation Scheme Concluded from Microsecond All-Atom Molecular Dynamics Simulations
0 -- 0Kolja Becker, Eva Balsa-Canto, Damjan Cicin-Sain, Astrid Hoermann, Hilde Janssens, Julio R. Banga, Johannes Jaeger. Drosophila melanogaster
0 -- 0Paola Carrillo-Bustamante, Can Kesmir, Rob J. De Boer. Virus Encoded MHC-Like Decoys Diversify the Inhibitory KIR Repertoire
0 -- 0Pralay Mitra, David Shultis, Jeffrey R. Brender, Jeff Czajka, David Marsh, Felicia Gray, Tomasz Cierpicki, Yang Zhang. Mycobacterium tuberculosis
0 -- 0Stewart Heitmann, Tjeerd W. Boonstra, Michael Breakspear. A Dendritic Mechanism for Decoding Traveling Waves: Principles and Applications to Motor Cortex
0 -- 0Geir Kjetil Sandve, Anton Nekrutenko, James Taylor, Eivind Hovig. Ten Simple Rules for Reproducible Computational Research
0 -- 0José Lourenço, Mario Recker. Natural, Persistent Oscillations in a Spatial Multi-Strain Disease System with Application to Dengue
0 -- 0Tim Odenthal, Bart Smeets, Paul Van Liedekerke, Engelbert Tijskens, Hans Van Oosterwyck, Herman Ramon. Analysis of Initial Cell Spreading Using Mechanistic Contact Formulations for a Deformable Cell Model
0 -- 0Dongjun Chung, Dan Park, Kevin Myers, Jeffrey Grass, Patricia Kiley, Robert Landick, Sündüz Keles. dPeak: High Resolution Identification of Transcription Factor Binding Sites from PET and SET ChIP-Seq Data
0 -- 0Biswa Sengupta, Simon B. Laughlin, Jeremy E. Niven. Balanced Excitatory and Inhibitory Synaptic Currents Promote Efficient Coding and Metabolic Efficiency
0 -- 0Joshua G. Schraiber, Yulia Mostovoy, Tiffany Y. Hsu, Rachel B. Brem. Inferring Evolutionary Histories of Pathway Regulation from Transcriptional Profiling Data
0 -- 0Fan Jin, Chen Yu, Luhua Lai, Zhirong Liu. Ligand Clouds around Protein Clouds: A Scenario of Ligand Binding with Intrinsically Disordered Proteins
0 -- 0Andreas Spitzmüller, Jordi Mestres. P. falciparum Target Space Relevant to Malaria Drug Discovery
0 -- 0Anna L. Tyler, Wei Lu, Justin J. Hendrick, Vivek M. Philip, Gregory W. Carter. CAPE: An R Package for Combined Analysis of Pleiotropy and Epistasis
0 -- 0Donald R. Olson, Kevin J. Konty, Marc Paladini, Cécile Viboud, Lone Simonsen. Reassessing Google Flu Trends Data for Detection of Seasonal and Pandemic Influenza: A Comparative Epidemiological Study at Three Geographic Scales
0 -- 0Katrina M. Kutchko, Flavio Fröhlich. Emergence of Metastable State Dynamics in Interconnected Cortical Networks with Propagation Delays
0 -- 0Pierre Yger, Kenneth D. Harris. The Convallis Rule for Unsupervised Learning in Cortical Networks
0 -- 0Luca Grieco, Laurence Calzone, Isabelle Bernard-Pierrot, François Radvanyi, Brigitte Kahn-Perlès, Denis Thieffry. Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision
0 -- 0Jorg J. A. Calis, Matt Maybeno, Jason A. Greenbaum, Daniela Weiskopf, Aruna D. De Silva, Alessandro Sette, Can Kesmir, Björn Peters. Properties of MHC Class I Presented Peptides That Enhance Immunogenicity
0 -- 0Markus Butz, Arjen Van Ooyen. A Simple Rule for Dendritic Spine and Axonal Bouton Formation Can Account for Cortical Reorganization after Focal Retinal Lesions
0 -- 0Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M. Wallace, Vinod Kumar, Ursula Pieper, Andrej Sali, James R. Brown, John P. Overington, Marc A. Martí-Renom. Mycobacterium tuberculosis
0 -- 0Virginie Bernard, Magali Michaut. Explain Bioinformatics to Your Grandmother!
0 -- 0Qiang Luo, Tian Ge, Fabian Grabenhorst, Jianfeng Feng, Edmund T. Rolls. Attention-Dependent Modulation of Cortical Taste Circuits Revealed by Granger Causality with Signal-Dependent Noise
0 -- 0Rene Rex, Nelli Bill, Kerstin Schmidt-Hohagen, Dietmar Schomburg. Dinoroseobacter shibae
0 -- 0Kriti Puniyani, Eric P. Xing. GINI: From ISH Images to Gene Interaction Networks
0 -- 0Francesca Falcetta, Monica Lupi, Valentina Colombo, Paolo Ubezio. Dynamic Rendering of the Heterogeneous Cell Response to Anticancer Treatments
0 -- 0Ryan Suderman, Eric J. Deeds. Machines vs. Ensembles: Effective MAPK Signaling through Heterogeneous Sets of Protein Complexes
0 -- 0Christian Tetzlaff, Christoph Kolodziejski, Marc Timme, Misha Tsodyks, Florentin Wörgötter. Synaptic Scaling Enables Dynamically Distinct Short- and Long-Term Memory Formation
0 -- 0Farzad Farkhooi, Anja Froese, Eilif Muller, Randolf Menzel, Martin P. Nawrot. Cellular Adaptation Facilitates Sparse and Reliable Coding in Sensory Pathways
0 -- 0Patrick M. Buck, Sandeep Kumar, Satish K. Singh. On the Role of Aggregation Prone Regions in Protein Evolution, Stability, and Enzymatic Catalysis: Insights from Diverse Analyses
0 -- 0Ruth Nussinov. PLOS Computational Biology Help the Biological Sciences?
0 -- 0Sebastian Gluth, Jörg Rieskamp, Christian Büchel. Deciding Not to Decide: Computational and Neural Evidence for Hidden Behavior in Sequential Choice
0 -- 0Martin M. Monti, Evan S. Lutkenhoff, Mikail Rubinov, Pierre Boveroux, Audrey Vanhaudenhuyse, Olivia Gosseries, Marie-Aurélie Bruno, Quentin Noirhomme, Mélanie Boly, Steven Laureys. Dynamic Change of Global and Local Information Processing in Propofol-Induced Loss and Recovery of Consciousness
0 -- 0Rogan Carr, Shai S. Shen-Orr, Elhanan Borenstein. Reconstructing the Genomic Content of Microbiome Taxa through Shotgun Metagenomic Deconvolution
0 -- 0André Yoshiaki Kashiwabara, Ígor Bonadio, Vitor Onuchic, Felipe Amado, Rafael Mathias, Alan Mitchell Durham. ToPS: A Framework to Manipulate Probabilistic Models of Sequence Data
0 -- 0Chunfeng Zhao, Sergei Yu Noskov. The Molecular Mechanism of Ion-Dependent Gating in Secondary Transporters
0 -- 0Arnab Bhattacherjee, Stefan Wallin. Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening