Journal: PLoS Computational Biology

Volume 9, Issue 12

0 -- 0Sébastien Béhuret, Charlotte Deleuze, Leonel Gómez, Yves Frégnac, Thierry Bal. Cortically-Controlled Population Stochastic Facilitation as a Plausible Substrate for Guiding Sensory Transfer across the Thalamic Gateway
0 -- 0Geir Halnes, Ivar Østby, Klas H. Pettersen, Stig W. Omholt, Gaute T. Einevoll. Electrodiffusive Model for Astrocytic and Neuronal Ion Concentration Dynamics
0 -- 0Fran Lewitter. Moving Education Forward, Again!
0 -- 0Ambuj Kumar, Rituraj Purohit. Use of Long Term Molecular Dynamics Simulation in Predicting Cancer Associated SNPs
0 -- 0Adam Mahdi, Jacob Sturdy, Johnny T. Ottesen, Mette S. Olufsen. Modeling the Afferent Dynamics of the Baroreflex Control System
0 -- 0Kristina D. Simmons, Jason S. Prentice, Gasper Tkacik, Jan Homann, Heather K. Yee, Stephanie E. Palmer, Philip C. Nelson, Vijay Balasubramanian. Transformation of Stimulus Correlations by the Retina
0 -- 0Xiaoqiang Sun, Jiguang Bao, Kyle C. Nelson, King Chuen Li, George Kulik, Xiaobo Zhou. Systems Modeling of Anti-apoptotic Pathways in Prostate Cancer: Psychological Stress Triggers a Synergism Pattern Switch in Drug Combination Therapy
0 -- 0Christel Kamp, Mathieu Moslonka-Lefebvre, Samuel Alizon. Epidemic Spread on Weighted Networks
0 -- 0Adrien Nicolaï, Patrice Delarue, Patrick Senet. Decipher the Mechanisms of Protein Conformational Changes Induced by Nucleotide Binding through Free-Energy Landscape Analysis: ATP Binding to Hsp70
0 -- 0Nevena Todorova, Adam J. Makarucha, Nicholas D. M. Hine, Arash A. Mostofi, Irene Yarovsky. Dimensionality of Carbon Nanomaterials Determines the Binding and Dynamics of Amyloidogenic Peptides: Multiscale Theoretical Simulations
0 -- 0Aaron M. Bornstein, Nathaniel D. Daw. Cortical and Hippocampal Correlates of Deliberation during Model-Based Decisions for Rewards in Humans
0 -- 0Artemis Koukounari, Christl A. Donnelly, Irini Moustaki, Edridah M. Tukahebwa, Narcis B. Kabatereine, Shona Wilson, Joanne P. Webster, André M. Deelder, Birgitte J. Vennervald, Govert J. van Dam. A Latent Markov Modelling Approach to the Evaluation of Circulating Cathodic Antigen Strips for Schistosomiasis Diagnosis Pre- and Post-Praziquantel Treatment in Uganda
0 -- 0Sylvie Estrela, Sam P. Brown. Metabolic and Demographic Feedbacks Shape the Emergent Spatial Structure and Function of Microbial Communities
0 -- 0Alexander M. Walter, Paulo S. Pinheiro, Matthijs Verhage, Jakob B. Sørensen. 2+-Dependent Properties of Neurosecretion
0 -- 0Anne Lopes, Sophie Sacquin-Mora, Viktoriya Dimitrova, Elodie Laine, Yann Ponty, Alessandra Carbone. Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information
0 -- 0Patrick G. Blachly, César Augusto F. de Oliveira, Sarah L. Williams, James Andrew McCammon. Utilizing a Dynamical Description of IspH to Aid in the Development of Novel Antimicrobial Drugs
0 -- 0Amir Dezfouli, Bernard W. Balleine. Actions, Action Sequences and Habits: Evidence That Goal-Directed and Habitual Action Control Are Hierarchically Organized
0 -- 0Srinivasan Sivanandan, Athi N. Naganathan. A Disorder-Induced Domino-Like Destabilization Mechanism Governs the Folding and Functional Dynamics of the Repeat Protein IκBα
0 -- 0Kieran O'Neill, Nima Aghaeepour, Josef Spidlen, Ryan R. Brinkman. Flow Cytometry Bioinformatics
0 -- 0Tjaart A. P. de Beer, Roman A. Laskowski, Sarah L. Parks, Botond Sipos, Nick Goldman, Janet M. Thornton. Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset
0 -- 0Masaki Sasai, Yudai Kawabata, Koh Makishi, Kazuhito Itoh, Tomoki P. Terada. Time Scales in Epigenetic Dynamics and Phenotypic Heterogeneity of Embryonic Stem Cells
0 -- 0Evan J. Molinelli, Anil Korkut, Weiqing Wang, Martin L. Miller, Nicholas P. Gauthier, Xiaohong Jing, Poorvi Kaushik, Qin He, Gordon Mills, David B. Solit, Christine A. Pratilas, Martin Weigt, Alfredo Braunstein, Andrea Pagnani, Riccardo Zecchina, Chris Sander. Perturbation Biology: Inferring Signaling Networks in Cellular Systems
0 -- 0Regina Joice, Vagheesh Narasimhan, Jacqui Montgomery, Amar Bir Sidhu, Keunyoung Oh, Evan Meyer, Willythssa Pierre-Louis, Karl Seydel, Danny Milner, Kim Williamson, Roger Wiegand, Daouda Ndiaye, Johanna Daily, Dyann Wirth, Terrie Taylor, Curtis Huttenhower, Matthias Marti. Inferring Developmental Stage Composition from Gene Expression in Human Malaria
0 -- 0Matthias Jeschke, Stephan Baumgärtner, Stefan Legewie. Determinants of Cell-to-Cell Variability in Protein Kinase Signaling
0 -- 0Michela Candotti, Alberto Pérez, Carles Ferrer-Costa, Manuel Rueda, Tim Meyer, Josep Lluis Gelpí, Modesto Orozco. Exploring Early Stages of the Chemical Unfolding of Proteins at the Proteome Scale
0 -- 0Roger Guimerà, Marta Sales-Pardo. A Network Inference Method for Large-Scale Unsupervised Identification of Novel Drug-Drug Interactions
0 -- 0Teresa Szczepinska, Wataru Iwasaki, Thomas Abeel. The Spirit of Competition: To Win or Not To Win
0 -- 0T. Alex Perkins, Thomas W. Scott, Arnaud Le Menach, David L. Smith. Heterogeneity, Mixing, and the Spatial Scales of Mosquito-Borne Pathogen Transmission
0 -- 0Sriram Chandrasekaran, Nathan D. Price. Metabolic Constraint-Based Refinement of Transcriptional Regulatory Networks
0 -- 0Will D. Penny, Peter Zeidman, Neil Burgess. Forward and Backward Inference in Spatial Cognition
0 -- 0Joanne A. Fox, B. F. Francis Ouellette. Education in Computational Biology Today and Tomorrow
0 -- 0Ayse Ozlem Aykut, Ali Rana Atilgan, Canan Atilgan. Designing Molecular Dynamics Simulations to Shift Populations of the Conformational States of Calmodulin
0 -- 0Ben Klünder, Tina Freisinger, Roland Wedlich-Söldner, Erwin Frey. GDI-Mediated Cell Polarization in Yeast Provides Precise Spatial and Temporal Control of Cdc42 Signaling
0 -- 0Chieh-Chun Chen, Shu Xiao, Dan Xie, Xiaoyi Cao, Chun-Xiao Song, Ting Wang, Chuan He, Sheng Zhong. Understanding Variation in Transcription Factor Binding by Modeling Transcription Factor Genome-Epigenome Interactions
0 -- 0Antoine Neuraz, Laurent Chouchana, Georgia Malamut, Christine Le Beller, Denis Roche, Philippe Beaune, Patrice Degoulet, Anita Burgun, Marie-Anne Loriot, Paul Avillach. Phenome-Wide Association Studies on a Quantitative Trait: Application to TPMT Enzyme Activity and Thiopurine Therapy in Pharmacogenomics
0 -- 0Bin Wu, Julián García, Christoph Hauert, Arne Traulsen. Extrapolating Weak Selection in Evolutionary Games
0 -- 0Richard R. Stein, Vanni Bucci, Nora C. Toussaint, Charlie G. Buffie, Gunnar Rätsch, Eric G. Pamer, Chris Sander, João B. Xavier. Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota
0 -- 0Max Sajitz-Hermstein, Zoran Nikoloski. Structural Control of Metabolic Flux
0 -- 0Shouneng Peng, Jingze Tan, Sile Hu, Hang Zhou, Jing Guo, Li Jin, Kun Tang. Detecting Genetic Association of Common Human Facial Morphological Variation Using High Density 3D Image Registration
0 -- 0Erik M. Volz, Simon D. W. Frost. Inferring the Source of Transmission with Phylogenetic Data
0 -- 0Eduard J. Kerkhoven, Fiona Achcar, Vincent P. Alibu, Richard J. Burchmore, Ian H. Gilbert, Maciej Trybilo, Nicole N. Driessen, David Gilbert, Rainer Breitling, Barbara M. Bakker, Michael P. Barrett. Trypanosoma brucei
0 -- 0Sara El-Metwally, Taher Hamza, Magdi Zakaria, Mohamed Helmy. Next-Generation Sequence Assembly: Four Stages of Data Processing and Computational Challenges
0 -- 0Mike Bonny, Elisabeth Fischer-Friedrich, Martin Loose, Petra Schwille, Karsten Kruse. Membrane Binding of MinE Allows for a Comprehensive Description of Min-Protein Pattern Formation
0 -- 0Romain Brette. Sharpness of Spike Initiation in Neurons Explained by Compartmentalization