Manuel Rueda - researchr alias

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Viewing Publication 1 - 14 from 14

2024

Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyondIvo C. Leist, María Rivas-Torrubia, Marta E. Alarcón-Riquelme, Guillermo Barturen, Ivo Glynne Gut, Manuel Rueda. bmcbi, 25(1):373, December 2024. [doi]

Convert-Pheno: A software toolkit for the interconversion of standard data models for phenotypic dataManuel Rueda, Ivo C. Leist, Ivo Glynne Gut. jbi, 149:104558, January 2024. [doi]

2022

A quality control portal for sequencing data deposited at the European genome-phenome archiveDietmar Fernández-Orth, Manuel Rueda, Babita Singh, Mauricio Moldes, Aina Jene, Marta Ferri, Claudia Vasallo, Lauren A. Fromont, Arcadi Navarro, Jordi Rambla. bib, 23(3), 2022. [doi]

Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic dataManuel Rueda, Roberto Ariosa, Mauricio Moldes, Jordi Rambla. bioinformatics, 38(19):4656-4657, 2022. [doi]

2017

SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohortManuel Rueda, Ali Torkamani. bmcbi, 18(1), 2017. [doi]

1A Receptor Case StudyDawid Warszycki, Manuel Rueda, Stefan Mordalski, Kurt Kristiansen, Grzegorz Satala, Krzysztof Rataj, Zdzislaw Chilmonczyk, Ingebrigt Sylte, Ruben Abagyan, Andrzej J. Bojarski. jcisd, 57(2):311-321, 2017. [doi]

2013

Exploring Early Stages of the Chemical Unfolding of Proteins at the Proteome ScaleMichela Candotti, Alberto Pérez, Carles Ferrer-Costa, Manuel Rueda, Tim Meyer, Josep Lluis Gelpí, Modesto Orozco. ploscb, 9(12), 2013. [doi]

2012

ALiBERO: Evolving a Team of Complementary Pocket Conformations Rather than a Single LeaderManuel Rueda, Maxim Totrov, Ruben Abagyan. jcisd, 52(10):2705-2714, 2012. [doi]

2010

Recipes for the Selection of Experimental Protein Conformations for Virtual ScreeningManuel Rueda, Giovanni Bottegoni, Ruben Abagyan. jcisd, 50(1):186-193, 2010. [doi]

SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contactsManuel Rueda, Vsevolod Katritch, Eugene Raush, Ruben Abagyan. bioinformatics, 26(21):2784-2785, 2010. [doi]

2009

FlexServ: an integrated tool for the analysis of protein flexibilityJordi Camps, Oliver Carrillo, Agustí Emperador, Laura Orellana, Adam Hospital, Manuel Rueda, Damjan Cicin-Sain, Marco D Abramo, Josep Lluis Gelpí, Modesto Orozco. bioinformatics, 25(13):1709-1710, 2009. [doi]

Consistent Improvement of Cross-Docking Results Using Binding Site Ensembles Generated with Elastic Network Normal ModesManuel Rueda, Giovanni Bottegoni, Ruben Abagyan. jcisd, 49(3):716-725, 2009. [doi]

2007

A consensus view of protein dynamicsManuel Rueda, Carles Ferrer-Costa, Tim Meyer, Alberto Pérez, Jordi Camps, Adam Hospital, Josep Lluis Gelpí, Modesto Orozco. pnas, 104(3):796-801, 2007. [doi]

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