Yasukazu Nakamura - researchr alias

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Viewing Publication 1 - 32 from 32

2023

2018

DNA Data Bank of Japan: 30th anniversaryYuichi Kodama, Jun Mashima, Takehide Kosuge, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi. nar, 46(Database-Issue), 2018. [doi]

DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publicationYasuhiro Tanizawa, Takatomo Fujisawa, Yasukazu Nakamura. bioinformatics, 34(6):1037-1039, 2018. [doi]

2017

2016

DNA data bank of Japan (DDBJ) progress reportJun Mashima, Yuichi Kodama, Takehide Kosuge, Takatomo Fujisawa, Toshiaki Katayama, Hideki Nagasaki, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi. nar, 44(Database-Issue):51-57, 2016. [doi]

2015

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human dataYuichi Kodama, Jun Mashima, Takehide Kosuge, Toshiaki Katayama, Takatomo Fujisawa, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura. nar, 43(Database-Issue):18-22, 2015. [doi]

2014

2013

H2DB: a heritability database across multiple species by annotating trait-associated genomic lociEli Kaminuma, Takatomo Fujisawa, Yasuhiro Tanizawa, Naoko Sakamoto, Nori Kurata, Tokurou Shimizu, Yasukazu Nakamura. nar, 41(Database-Issue):880-884, 2013. [doi]

The International Nucleotide Sequence Database CollaborationYasukazu Nakamura, Guy Cochrane, Ilene Karsch-Mizrachi. nar, 41(Database-Issue):21-24, 2013. [doi]

DDBJ new system and service refactoringOsamu Ogasawara, Jun Mashima, Yuichi Kodama, Eli Kaminuma, Yasukazu Nakamura, Kousaku Okubo, Toshihisa Takagi. nar, 41(Database-Issue):25-29, 2013. [doi]

2012

The International Nucleotide Sequence Database CollaborationIlene Karsch-Mizrachi, Yasukazu Nakamura, Guy Cochrane. nar, 40(Database-Issue):33-37, 2012. [doi]

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experimentsYuichi Kodama, Jun Mashima, Eli Kaminuma, Takashi Gojobori, Osamu Ogasawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura. nar, 40(Database-Issue):38-42, 2012. [doi]

2011

The International Nucleotide Sequence Database CollaborationGuy Cochrane, Ilene Karsch-Mizrachi, Yasukazu Nakamura. nar, 39(Database-Issue):15-18, 2011. [doi]

DDBJ progress reportEli Kaminuma, Takehide Kosuge, Yuichi Kodama, Hideo Aono, Jun Mashima, Takashi Gojobori, Hideaki Sugawara, Osamu Ogasawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura. nar, 39(Database-Issue):22-27, 2011. [doi]

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applicationsToshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul J. P. Bonnal, José M. Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi. biomedsem, 2:4, 2011. [doi]

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applicationsToshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul J. P. Bonnal, José M. Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi. biomedsem, 2:4, 2011. [doi]

2010

DDBJ launches a new archive database with analytical tools for next-generation sequence dataEli Kaminuma, Jun Mashima, Yuichi Kodama, Takashi Gojobori, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura. nar, 38(Database-Issue):33-38, 2010. [doi]

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflowsToshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul J. P. Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José M. Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn 0004, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi. biomedsem, 1:8, 2010. [doi]

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflowsToshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul J. P. Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José M. Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn 0004, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi. biomedsem, 1:8, 2010. [doi]

CyanoBase: the cyanobacteria genome database update 2010Mitsuteru Nakao, Shinobu Okamoto, Mitsuyo Kohara, Tsunakazu Fujishiro, Takatomo Fujisawa, Shusei Sato, Satoshi Tabata, Takakazu Kaneko, Yasukazu Nakamura. nar, 38(Database-Issue):379-381, 2010. [doi]

2000

CyanoBase, the genome database for Synechocystis sp. strain PCC6803: status for the year 2000Yasukazu Nakamura, Takakazu Kaneko, Satoshi Tabata. nar, 28(1):72, 2000.

Codon usage tabulated from international DNA sequence databases: status for the year 2000Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura. nar, 28(1):292, 2000.

1999

Extension of CyanoBase. CyanoMutants: repository of mutant information on Synechocystis sp. strain PCC6803Yasukazu Nakamura, Takakazu Kaneko, Nobuyuki Miyajima, Satoshi Tabata. nar, 27(1):66-68, 1999.

Codon usage tabulated from the international DNA sequence databases; its status 1999Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura. nar, 27(1):292, 1999.

1998

CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803Yasukazu Nakamura, Takakazu Kaneko, Makoto Hirosawa, Nobuyuki Miyajima, Satoshi Tabata. nar, 26(1):63-67, 1998.

Codon usage tabulated from the international DNA sequence databasesYasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura. nar, 26(1):334, 1998.

1997

Codon usage tabulated from the international DNA sequence databasesYasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura. nar, 25(1):244-245, 1997.

1996

Detection of genes in Escherichia coli sequences determined by genome projects and prediction of protein production levels, based on multivariate diversity in codon usageShigehiko Kanaya, Y. Kudo, Yasukazu Nakamura, Toshimichi Ikemura. bioinformatics, 12(3):213-225, 1996.

Condon usage tabulated from the international DNA sequence databasesYasukazu Nakamura, Ken-nosuke Wada, Yoshiko Wada, Hirofumi Doi, Shigehiko Kanaya, Takashi Gojobori, Toshimichi Ikemura. nar, 24(1):214-215, 1996.

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