| 2573 | -- | 2579 | Teemu Kivioja, Mikko Arvas, Markku Saloheimo, Merja Penttilä, Esko Ukkonen. Optimization of cDNA-AFLP experiments using genomic sequence data |
| 2580 | -- | 2589 | Yan Zhang, Vadim N. Gladyshev. An algorithm for identification of bacterial selenocysteine insertion sequence elements and selenoprotein genes |
| 2590 | -- | 2595 | Daniel R. Clutterbuck, A. Leroy, M. A. O Connell, C. A. M. Semple. A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10 |
| 2596 | -- | 2603 | Jean-François Dufayard, Laurent Duret, Simon Penel, Manolo Gouy, François Rechenmann, Guy Perrière. Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases |
| 2604 | -- | 2610 | Hadas Leonov, Isaiah T. Arkin. A periodicity analysis of transmembrane helices |
| 2611 | -- | 2617 | Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures |
| 2618 | -- | 2622 | Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis. The properties of protein family space depend on experimental design |
| 2623 | -- | 2628 | Rajesh Chowdhary, R. Ayesha Ali, Werner Albig, Detlef Doenecke, Vladimir B. Bajic. Promoter modeling: the case study of mammalian histone promoters |
| 2629 | -- | 2635 | Jason E. Donald, Eugene I. Shakhnovich. Determining functional specificity from protein sequences |
| 2636 | -- | 2643 | Pengyu Hong, X. Shirley Liu, Qing Zhou, Xin Lu, Jun S. Liu, Wing Hung Wong. A boosting approach for motif modeling using ChIP-chip data |
| 2644 | -- | 2650 | Zheng Rong Yang. Mining SARS-CoV protease cleavage data using non-orthogonal decision trees: a novel method for decisive template selection |
| 2651 | -- | 2656 | Moti Zviling, Hadas Leonov, Isaiah T. Arkin. Genetic algorithm-based optimization of hydrophobicity tables |
| 2657 | -- | 2666 | Irad E. Ben-Gal, Ayala Shani, Andre Gohr, Jan Grau, S. Arviv, Armin Shmilovici, Stefan Posch, Ivo Grosse. Identification of transcription factor binding sites with variable-order Bayesian networks |
| 2667 | -- | 2673 | Sangjo Han, Byung-chul Lee, Seung Taek Yu, Chan-seok Jeong, Soyoung Lee, Dongsup Kim. Fold recognition by combining profile-profile alignment and support vector machine |
| 2684 | -- | 2690 | Gregory R. Grant, Junmin Liu, Christian J. Stoeckert Jr.. A practical false discovery rate approach to identifying patterns of differential expression in microarray data |
| 2691 | -- | 2697 | Jane Jijun Liu, Gene Cutler, Wuxiong Li, Zheng Pan, Sihua Peng, Timothy Hoey, Liangbiao Chen, Xuefeng Bruce Ling. Multiclass cancer classification and biomarker discovery using GA-based algorithms |
| 2698 | -- | 2705 | Bor-Sen Chen, Yu-Chao Wang, Wei-Sheng Wu, Wen-Hsiung Li. A new measure of the robustness of biochemical networks |
| 2706 | -- | 2713 | Svetlana Bulashevska, Roland Eils. Inferring genetic regulatory logic from expression data |
| 2714 | -- | 2721 | Thierry Emonet, Charles M. Macal, Michael J. North, Charles E. Wickersham, Philippe Cluzel. AgentCell: a digital single-cell assay for bacterial chemotaxis |
| 2722 | -- | 2729 | Luonan Chen, Ruiqi Wang, Tianshou Zhou, Kazuyuki Aihara. Noise-induced cooperative behavior in a multicell system |
| 2730 | -- | 2738 | Nitin Bhardwaj, Hui Lu. Correlation between gene expression profiles and protein-protein interactions within and across genomes |
| 2739 | -- | 2747 | Phil Hyoun Lee, Doheon Lee. Modularized learning of genetic interaction networks from biological annotations and mRNA expression data |
| 2748 | -- | 2758 | Irena Spasic, Sophia Ananiadou, Jun-ichi Tsujii. MaSTerClass: a case-based reasoning system for the classification of biomedical terms |
| 2759 | -- | 2765 | Zhang-Zhi Hu, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu. Literature mining and database annotation of protein phosphorylation using a rule-based system |
| 2766 | -- | 2772 | René Korn, Sascha Röhrig, Steffen Schulze-Kremer, Ulrich Brinkmann. Common denominator procedure: a novel approach to gene-expression data mining for identification of phenotype-specific genes |
| 2773 | -- | 2779 | J. Stuart Aitken. Formalizing concepts of species, sex and developmental stage in anatomical ontologies |
| 2780 | -- | 2782 | Chin Lung Lu, Tsui Ching Wang, Ying Chih Lin, Chuan Yi Tang. ROBIN: a tool for genome rearrangement of block-interchanges |
| 2783 | -- | 2784 | Vincent Miele, Pierre-Yves Bourguignon, David Robelin, Grégory Nuel, Hugues Richard. seq++: analyzing biological sequences with a range of Markov-related models |
| 2785 | -- | 2786 | Daniel Schober, Ulf Leser, Martin Zenke, Jens Reich. GandrKB--ontological microarray annotation and visualization |
| 2787 | -- | 2788 | Taner Z. Sen, Robert L. Jernigan, Jean Garnier, Andrzej Kloczkowski. GOR V server for protein secondary structure prediction |
| 2789 | -- | 2790 | Aedín C. Culhane, Jean Thioulouse, Guy Perrière, Desmond G. Higgins. MADE4: an R package for multivariate analysis of gene expression data |
| 2791 | -- | 2793 | Albert J. Vilella, Angel Blanco-Garcia, Stephan Hutter, Julio Rozas. VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data |
| 2794 | -- | 2796 | Yu Song, Eunju Kim, Gary Geunbae Lee, Byoung-Kee Yi. POSBIOTM-NER: a trainable biomedical named-entity recognition system |
| 2797 | -- | 2802 | Guillaume Koum, Augustin Yekel, Bengyella Ndifon, Frédéric Simard. Erratum |