Journal: Bioinformatics

Volume 23, Issue 4

401 -- 407Isabelle Rivals, Léon Personnaz, Lieng Taing, Marie-Claude Potier. Enrichment or depletion of a GO category within a class of genes: which test?
408 -- 413Shuichi Takitoh, Shogo Fujii, Yoichi Mase, Junichi Takasaki, Toshimasa Yamazaki, Yozo Ohnishi, Masao Yanagisawa, Yusuke Nakamura, Naoyuki Kamatani. Accurate automated clustering of two-dimensional data for single-nucleotide polymorphism genotyping by a combination of clustering methods: evaluation by large-scale real data
414 -- 420Yvan Saeys, Pierre Rouzé, Yves Van de Peer. In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists
421 -- 426Noga Kowalsman, Miriam Eisenstein. Inherent limitations in protein-protein docking procedures
427 -- 433José Ignacio Garzón, Julio A. Kovacs, Ruben Abagyan, Pablo Chacón. ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage
434 -- 441Hisanori Kiryu, Taishin Kin, Kiyoshi Asai. Robust prediction of consensus secondary structures using averaged base pairing probability matrices
442 -- 449Nitai D. Mukhopadhyay, Snigdhansu Chatterjee. Causality and pathway search in microarray time series experiment
450 -- 457Jun Liu, Sanjay Ranka, Tamer Kahveci. Markers improve clustering of CGH data
458 -- 465Jangsun Baek, Young Sook Son, Geoffrey J. McLachlan. Segmentation and intensity estimation of microarray images using a gamma-t mixture model
466 -- 472Shuangge Ma, Jian Huang. Clustering threshold gradient descent regularization: with applications to microarray studies
473 -- 479Huai Li, Yu Sun, Ming Zhan. The discovery of transcriptional modules by a two-stage matrix decomposition approach
480 -- 486Orland R. Gonzalez, Christoph Küper, Kirsten Jung, Prospero C. Naval Jr., Eduardo Mendoza. Parameter estimation using Simulated Annealing for S-system models of biochemical networks
487 -- 492Michael V. Doran, Daniela Stan Raicu, Jacob D. Furst, Raffaella Settimi, Matthew Schipma, Darrell P. Chandler. Oligonucleotide microarray identification of ::::Bacillus anthracis:::: strains using support vector machines
493 -- 495Matteo Brilli, Renato Fani, Pietro Liò. MotifScorer: using a compendium of microarrays to identify regulatory motifs
496 -- 497André Müller, Karlheinz Holzmann, Hans A. Kestler. Visualization of genomic aberrations using Affymetrix SNP arrays
498 -- 499Thomas Derrien, Catherine André, Francis Galibert, Christophe Hitte. AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps
500 -- 501René L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt. Assembling millions of short DNA sequences using SSAKE
502 -- 503Tancred Frickey, Georg Weiller. Mclip: motif detection based on cliques of gapped local profile-to-profile alignments
504 -- 506Zong Hong Zhang, Judice L. Y. Koh, Guanglan Zhang, Khar Heng Choo, Martti T. Tammi, Joo Chuan Tong. AllerTool: a web server for predicting allergenicity and allergic cross-reactivity in proteins
507 -- 508Fang Fang, Jing Ding, Vladimir N. Minin, Marc A. Suchard, Karin S. Dorman. cBrother: relaxing parental tree assumptions for Bayesian recombination detection
509 -- 510Mahesh Panchal. The automation of Nested Clade Phylogeographic Analysis
511 -- 512Pawel Górecki, Jerzy Tiuryn. URec: a system for unrooted reconciliation
513 -- 514Stefan J. Suhrer, Markus Wiederstein, Manfred J. Sippl. QSCOP - SCOP quantified by structural relationships
515 -- 516Alessandro Pandini, Laura Bonati, Franca Fraternali, Jens Kleinjung. MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database
517 -- 519Winston Lau, Tai-Yue Kuo, William Tapper, Simon Cox, Andrew Collins. Exploiting large scale computing to construct high resolution linkage disequilibrium maps of the human genome
520 -- 521Garrett Hellenthal, Matthew Stephens. msHOT: modifying Hudson s ms simulator to incorporate crossover and gene conversion hotspots
522 -- 523Vincent Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman. GGtools: analysis of genetics of gene expression in bioconductor
524 -- 526Tetsuro Toyoda, Yoshiki Mochizuki, Keith Player, Naohiko Heida, Norio Kobayashi, Yoshiyuki Sakaki. OmicBrowse: a browser of multidimensional omics annotations