| 2363 | -- | 2367 | Benilton Carvalho, Rafael A. Irizarry. A framework for oligonucleotide microarray preprocessing |
| 2368 | -- | 2374 | Nikolas Askitis, Ranjan Sinha. RepMaestro: scalable repeat detection on disk-based genome sequences |
| 2375 | -- | 2382 | Hua Zhou, Mary E. Sehl, Janet S. Sinsheimer, Kenneth Lange. Association screening of common and rare genetic variants by penalized regression |
| 2383 | -- | 2390 | Akito Taneda. Multi-objective pairwise RNA sequence alignment |
| 2391 | -- | 2397 | Hashem Koohy, Nigel P. Dyer, John E. Reid, Georgy Koentges, Sascha Ott. An alignment-free model for comparison of regulatory sequences |
| 2398 | -- | 2405 | David W. Ritchie, Vishwesh Venkatraman. Ultra-fast FFT protein docking on graphics processors |
| 2406 | -- | 2415 | Navdeep Jaitly, Marcus A. Brubaker, John L. Rubinstein, Ryan H. Lilien. A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy |
| 2416 | -- | 2423 | Hai-son Le, Zoltán N. Oltvai, Ziv Bar-Joseph. Cross-species queries of large gene expression databases |
| 2424 | -- | 2430 | Oleh Dzyubachyk, Jeroen Essers, Wiggert A. van Cappellen, Céline Baldeyron, Akiko Inagaki, Wiro J. Niessen, Erik H. W. Meijering. Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci |
| 2431 | -- | 2437 | Philip M. R. Tedder, James R. Bradford, Chris J. Needham, Glenn A. McConkey, Andrew J. Bulpitt, David R. Westhead. Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite ::::Plasmodium falciparum:::: |
| 2438 | -- | 2444 | Alexander Lachmann, Huilei Xu, Jayanth Krishnan, Seth I. Berger, Amin R. Mazloom, Avi Ma ayan. ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments |
| 2445 | -- | 2451 | Bo Jin, Xinghua Lu. Identifying informative subsets of the Gene Ontology with information bottleneck methods |
| 2452 | -- | 2454 | Nikos Darzentas, A. Bousios, V. Apostolidou, A. S. Tsaftaris. MASiVE: Mapping and Analysis of SireVirus Elements in plant genome sequences |
| 2455 | -- | 2457 | Wayne Delport, Art F. Y. Poon, Simon D. W. Frost, Sergei L. Kosakovsky Pond. Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology |
| 2458 | -- | 2459 | Thomas A. Peterson, Asa Adadey, Ivette Santana-Cruz, Yanan Sun, Andrew Winder, Maricel G. Kann. DMDM: domain mapping of disease mutations |
| 2460 | -- | 2461 | Robert C. Edgar. Search and clustering orders of magnitude faster than BLAST |
| 2462 | -- | 2463 | Darren P. Martin, Philippe Lemey, Martin Lott, Vincent Moulton, David Posada, Pierre Lefeuvre. RDP3: a flexible and fast computer program for analyzing recombination |
| 2464 | -- | 2465 | Wen-Chi Chou, Yanbin Yin, Ying Xu. GolgiP: prediction of Golgi-resident proteins in plants |
| 2466 | -- | 2467 | Menachem Fromer, Chen Yanover, Amir Harel, Ori Shachar, Yair Weiss, Michal Linial. SPRINT: side-chain prediction inference toolbox for multistate protein design |
| 2468 | -- | 2469 | Adeline Simon, Eric Biot. ANAIS: Analysis of NimbleGen Arrays Interface |
| 2470 | -- | 2471 | Ravi Shankar, Helen E. Parkinson, Tony Burdett, Emma Hastings, Junmin Liu, Michael Miller, Rashmi Srinivasa, Joseph White, Alvis Brazma, Gavin Sherlock, Christian J. Stoeckert Jr., Catherine A. Ball. Annotare - a tool for annotating high-throughput biomedical investigations and resulting data |
| 2472 | -- | 2473 | Kevin C. Dorff, Nyasha Chambwe, Marko Srdanovic, Fabien Campagne. BDVal: reproducible large-scale predictive model development and validation in high-throughput datasets |
| 2474 | -- | 2476 | Tsun-Po Yang, Claude Beazley, Stephen B. Montgomery, Antigone S. Dimas, Maria Gutierrez-Arcelus, Barbara E. Stranger, Panos Deloukas, Emmanouil T. Dermitzakis. Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies |
| 2477 | -- | 2479 | Thai Quang Tung, Doheon Lee. PSExplorer: whole parameter space exploration for molecular signaling pathway dynamics |
| 2480 | -- | 2481 | Anika Jöcker, Johanna Sonntag, Frauke Henjes, Frank Götschel, Achim Tresch, Tim Beißbarth, Stefan Wiemann, Ulrike Korf. QuantProReloaded: quantitative analysis of microspot immunoassays |
| 2482 | -- | 2483 | Arnold Kuzniar, Somdutta Dhir, Harm Nijveen, Sándor Pongor, Jack A. M. Leunissen. Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks |
| 2484 | -- | 2485 | Phoenix Kwan, Amanda Birmingham. NoiseMaker: simulated screens for statistical assessment |
| 2486 | -- | 2487 | Yoshinobu Kano, Paul Dobson, Mio Nakanishi, Jun-ichi Tsujii, Sophia Ananiadou. Text mining meets workflow: linking U-Compare with Taverna |
| 2488 | -- | 2489 | H. Paul Benton, Elizabeth J. Want, Timothy M. D. Ebbels. Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data |
| 2490 | -- | 2492 | Georgios N. Tsaousis, Konstantinos D. Tsirigos, Xanthi D. Andrianou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas. ExTopoDB: a database of experimentally derived topological models of transmembrane proteins |
| 2493 | -- | 2495 | Jie Bai, Junrong Wang, Feng Xue, Jingsong Li, Lijing Bu, Junming Hu, Gang Xu, Qiyu Bao, Guoping Zhao, Xiaoming Ding, Jie Yan, Jinyu Wu. proTF: a comprehensive data and phylogenomics resource for prokaryotic transcription factors |
| 2496 | -- | 2497 | Julia D. Fischer, Gemma L. Holliday, Janet M. Thornton. The CoFactor database: organic cofactors in enzyme catalysis |
| 2498 | -- | 0 | Anna Marabotti, Angelo M. Facchiano. The misuse of terms in scientific literature |
| 2499 | -- | 0 | Elena Yavorska Harris, Nadia Ponts, Aleksandr Levchuk, Karine G. Le Roch, Stefano Lonardi. BRAT: bisulfite-treated reads analysis tool |
| 2500 | -- | 0 | Andrew D. Fernandes, Gregory B. Gloor. Mutual information is critically dependent on prior assumptions: would the ::::correct:::: estimate of mutual information please identify itself? |