| 2775 | -- | 2781 | Xiaohua Douglas Zhang, Francesca Santini, Raul Lacson, Shane D. Marine, Qian Wu, Luca Benetti, Ruojing Yang, Alex McCampbell, Joel P. Berger, Dawn M. Toolan, Erica M. Stec, Daniel J. Holder, Keith A. Soper, Joseph F. Heyse, Marc Ferrer. cSSMD: assessing collective activity for addressing off-target effects in genome-scale RNA interference screens |
| 2782 | -- | 2789 | Lucía Spangenberg, Florian Battke, Martí Graña, Kay Nieselt, Hugo Naya. Identifying associations between amino acid changes and meta information in alignments |
| 2790 | -- | 2796 | Matthew Ruffalo, Thomas LaFramboise, Mehmet Koyutürk. Comparative analysis of algorithms for next-generation sequencing read alignment |
| 2797 | -- | 2805 | Tilo Eißler, Christopher P. Hodges, Harald Meier. PTPan - overcoming memory limitations in oligonucleotide string matching for primer/probe design |
| 2806 | -- | 2811 | Eugen Fazius, Vladimir Shelest, Ekaterina Shelest. SiTaR: a novel tool for transcription factor binding site prediction |
| 2812 | -- | 2819 | Catherine Mooney, Yong-hong Wang, Gianluca Pollastri. SCLpred: protein subcellular localization prediction by N-to-1 neural networks |
| 2820 | -- | 2827 | Anisah W. Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie. Spatial clustering of protein binding sites for template based protein docking |
| 2828 | -- | 2835 | Ying Shen, Hau-San Wong, Shaohong Zhang, Zhiwen Yu. Feature-based 3D motif filtering for ribosomal RNA |
| 2836 | -- | 2842 | Elad Donsky, Haim J. Wolfson. PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors |
| 2843 | -- | 2850 | José Ramón López-Blanco, José Ignacio Garzón, Pablo Chacón. iMod: multipurpose normal mode analysis in internal coordinates |
| 2851 | -- | 2858 | Zhengyu Ouyang, Mingzhou Song, Robert Güth, Thomas Ha, Matt Larouche, Daniel Goldowitz. Conserved and differential gene interactions in dynamical biological systems |
| 2859 | -- | 2865 | Pushpike Jayantha Thilakarathne, Lieven Clement, Dan Lin 0004, Ziv Shkedy, Adetayo Kasim, Willem Talloen, Matthias Versele, Geert Verbeke. ® peptide array data: an application to an oncology experiment |
| 2866 | -- | 2872 | Melissa M. Matzke, Katrina M. Waters, Thomas O. Metz, Jon M. Jacobs, Amy C. Sims, Ralph S. Baric, Joel G. Pounds, Bobbie-Jo M. Webb-Robertson. Improved quality control processing of peptide-centric LC-MS proteomics data |
| 2873 | -- | 2879 | Andrea Ocone, Guido Sanguinetti. Reconstructing transcription factor activities in hierarchical transcription network motifs |
| 2880 | -- | 2887 | Barak Markus, Ohad S. Birk, Dan Geiger. Integration of SNP genotyping confidence scores in IBD inference |
| 2888 | -- | 2894 | Anthony R. Soltis, Jeffrey J. Saucerman. Robustness portraits of diverse biological networks conserved despite order-of-magnitude parameter uncertainty |
| 2895 | -- | 2902 | Lei Qu, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers, Hanchuan Peng. C.elegans |
| 2903 | -- | 2904 | Matthew K. Iyer, Arul M. Chinnaiyan, Christopher A. Maher. ChimeraScan: a tool for identifying chimeric transcription in sequencing data |
| 2905 | -- | 2906 | Arnaud Despalins, Souhir Marsit, Jacques Oberto. Absynte: a web tool to analyze the evolution of orthologous archaeal and bacterial gene clusters |
| 2907 | -- | 2909 | Bernd Jagla, Bernd Wiswedel, Jean-Yves Coppée. Extending KNIME for next-generation sequencing data analysis |
| 2910 | -- | 2912 | Filip Bielejec, Andrew Rambaut, Marc A. Suchard, Philippe Lemey. SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics |
| 2913 | -- | 2914 | Shide Liang, Dandan Zheng, Chi Zhang, Daron M. Standley. Fast and accurate prediction of protein side-chain conformations |
| 2915 | -- | 2916 | Anna Vangone, Raffaele Spinelli, Vittorio Scarano, Luigi Cavallo, Romina Oliva. COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes |
| 2917 | -- | 2918 | Atanas Kamburov, Rachel Cavill, Timothy M. D. Ebbels, Ralf Herwig, Hector C. Keun. Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA |
| 2919 | -- | 2920 | Jike Cui, Todd F. DeLuca, Jae-Yoon Jung, Dennis P. Wall. Detecting biological network organization and functional gene orthologs |
| 2921 | -- | 2923 | Rui-Ru Ji, Nathan O. Siemers, Ming Lei, Liang Schweizer, Robert E. Bruccoleri. SDRS - an algorithm for analyzing large-scale dose-response data |
| 2924 | -- | 2925 | Christina M. Bergey. Alu insertions for use in primate phylogeny and population genetics |