| 1105 | -- | 1111 | Seonjoo Lee, Pauline E. Chugh, Haipeng Shen, R. Eberle, Dirk P. Dittmer. Poisson factor models with applications to non-normalized microRNA profiling |
| 1112 | -- | 1119 | Carsten Kemena, Giovanni Bussotti, Emidio Capriotti, Marc A. Martí-Renom, Cédric Notredame. Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package |
| 1120 | -- | 1126 | Catherine Mooney, Niall J. Haslam, Thérèse A. Holton, Gianluca Pollastri, Denis C. Shields. PeptideLocator: prediction of bioactive peptides in protein sequences |
| 1127 | -- | 1133 | Zhiqiang Yan, Liyong Guo, Liang Hu, Jin Wang. Specificity and affinity quantification of protein-protein interactions |
| 1134 | -- | 1140 | Robert Schneider, Florian Odronitz, Björn Hammesfahr, Marcel Hellkamp, Martin Kollmar. Peakr: simulating solid-state NMR spectra of proteins |
| 1141 | -- | 1148 | Moritz Aschoff, Agnes Hotz-Wagenblatt, Karl-Heinz Glatting, Matthias Fischer, Roland Eils, Rainer König. SplicingCompass: differential splicing detection using RNA-Seq data |
| 1149 | -- | 1157 | Thierry Rème, Dirk Hose, Charles Theillet, Bernard Klein. Modeling risk stratification in human cancer |
| 1158 | -- | 1165 | Dafyd J. Jenkins, Bärbel Finkenstädt, David A. Rand. A temporal switch model for estimating transcriptional activity in gene expression |
| 1166 | -- | 1173 | Giuseppe Facchetti, Giovanni Iacono, Giovanna De Palo, Claudio Altafini. A rate-distortion theory for gene regulatory networks and its application to logic gate consistency |
| 1174 | -- | 1181 | Chia-Chin Wu, Kalpana Kannan, Steven Lin, Laising Yen, Aleksandar Milosavljevic. Identification of cancer fusion drivers using network fusion centrality |
| 1182 | -- | 1189 | George Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji. ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data |
| 1190 | -- | 1198 | Noah Youngs, Duncan Penfold-Brown, Kevin Drew, Dennis Shasha, Richard Bonneau. Parametric Bayesian priors and better choice of negative examples improve protein function prediction |
| 1199 | -- | 1205 | Misook Ha, Soondo Hong, Wen-Hsiung Li. Predicting the probability of H3K4me3 occupation at a base pair from the genome sequence context |
| 1206 | -- | 1207 | Yoli Shavit, Pietro Liò. CytoHiC: a cytoscape plugin for visual comparison of Hi-C networks |
| 1208 | -- | 1209 | Gabriel Renaud, Martin Kircher, Udo Stenzel, Janet Kelso. freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers |
| 1210 | -- | 1211 | Yan Guo, Jiang Li, Chung-I. Li, Yu Shyr, David C. Samuels. MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis |
| 1212 | -- | 1214 | David Weisman, Michie Yasuda, Jennifer L. Bowen. FunFrame: functional gene ecological analysis pipeline |
| 1215 | -- | 1217 | Thierry Schüpbach, Marco Pagni, Alan Bridge, Lydie Bougueleret, Ioannis Xenarios, Lorenzo Cerutti. pfsearchV3: a code acceleration and heuristic to search PROSITE profiles |
| 1218 | -- | 1219 | Laurie E. Grove, David R. Hall, Dmitri Beglov, Sandor Vajda, Dima Kozakov. FTFlex: accounting for binding site flexibility to improve fragment-based identification of druggable hot spots |
| 1220 | -- | 1222 | Quan Long, Qingrun Zhang, Bjarni J. Vilhjalmsson, Petar Forai, Ümit Seren, Magnus Nordborg. JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models |
| 1223 | -- | 1225 | Xiaoyi Cao, Sheng Zhong. Enabling interspecies epigenomic comparison with CEpBrowser |
| 1226 | -- | 1228 | Karsten Hiller, André Wegner, Daniel Weindl, Thekla Cordes, Christian M. Metallo, Joanne K. Kelleher, Gregory Stephanopoulos. NTFD - a stand-alone application for the non-targeted detection of stable isotope-labeled compounds in GC/MS data |
| 1229 | -- | 1230 | Fengkai Zhang, Bastian Robert Angermann, Martin Meier-Schellersheim. The Simmune Modeler visual interface for creating signaling networks based on bi-molecular interactions |
| 1231 | -- | 1232 | Olivier Taboureau, Ulrik Plesner Jacobsen, Christian Kalhauge, Daniel Edsgärd, Olga Rigina, Ramneek Gupta, Karine Audouze. HExpoChem: a systems biology resource to explore human exposure to chemicals |
| 1233 | -- | 1234 | Jelle Scholtalbers, Jasmin Rößler, Patrick Sorn, Jos de Graaf, Valesca Boisguérin, John C. Castle, Ugur Sahin. Galaxy LIMS for next-generation sequencing |
| 1235 | -- | 1237 | Fábio C. P. Navarro, Pedro A. F. Galante. RCPedia: a database of retrocopied genes |
| 1238 | -- | 1239 | Samuel Croset, John P. Overington, Dietrich Rebholz-Schuhmann. Brain: biomedical knowledge manipulation |