| 1341 | -- | 1348 | Feifei Xiao, Xiaoyi Min, Heping Zhang. Modified screening and ranking algorithm for copy number variation detection |
| 1349 | -- | 1356 | Salem Malikic, Andrew W. McPherson, Nilgun Donmez, Cenk S. Sahinalp. Clonality inference in multiple tumor samples using phylogeny |
| 1357 | -- | 1365 | Darui Xu, Kara Marquis, Jimin Pei, Szu-Chin Fu, Tolga Cagatay, Nick V. Grishin, Yuh Min Chook. LocNES: a computational tool for locating classical NESs in CRM1 cargo proteins |
| 1366 | -- | 1374 | Jun Ding, Xiaoman Li, Haiyan Hu. MicroRNA modules prefer to bind weak and unconventional target sites |
| 1375 | -- | 1381 | Qiang Wei, Xiaowei Zhan, Xue Zhong, Yongzhuang Liu, Yujun Han, Wei Chen, Bingshan Li. de novo mutation calling in parents-offspring trios |
| 1382 | -- | 1388 | Peter Meinicke. UProC: tools for ultra-fast protein domain classification |
| 1389 | -- | 1395 | Szymon Grabowski, Sebastian Deorowicz, Lukasz Roguski. Disk-based compression of data from genome sequencing |
| 1396 | -- | 1404 | Ivan Borozan, Stuart N. Watt, Vincent Ferretti. Integrating alignment-based and alignment-free sequence similarity measures for biological sequence classification |
| 1405 | -- | 1410 | Baldo Oliva, Narcis Fernandez-Fuentes. Knowledge-based modeling of peptides at protein interfaces: PiPreD |
| 1411 | -- | 1419 | Fuyi Li, Chen Li, Mingjun Wang, Geoffrey I. Webb, Yang Zhang, James C. Whisstock, Jiangning Song. GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome |
| 1420 | -- | 1427 | Andrea Rau, Cathy Maugis-Rabusseau, Marie-Laure Martin-Magniette, Gilles Celeux. Co-expression analysis of high-throughput transcriptome sequencing data with Poisson mixture models |
| 1428 | -- | 1435 | Bernie J. Daigle Jr., Mohammad Soltani, Linda R. Petzold, Abhyudai Singh. Inferring single-cell gene expression mechanisms using stochastic simulation |
| 1436 | -- | 1443 | Jing Zhu, Zhiao Shi, Jing Wang, Bing Zhang 0003. Empowering biologists with multi-omics data: colorectal cancer as a paradigm |
| 1444 | -- | 1451 | Jobie Kirkwood, David Hargreaves, Simon O'Keefe, Julie Wilson. Using isoelectric point to determine the pH for initial protein crystallization trials |
| 1452 | -- | 1459 | Rui Chen, Qiang Wei, Xiaowei Zhan, Xue Zhong, James S. Sutcliffe, Nancy J. Cox, Edwin H. Cook, Chun Li, Wei Chen, Bingshan Li. A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis |
| 1460 | -- | 1462 | Guangyuan Yang, Wei Jiang, Qiang Yang 0001, Weichuan Yu. PBOOST: a GPU-based tool for parallel permutation tests in genome-wide association studies |
| 1463 | -- | 1465 | Jiyuan An, John Lai, Atul Sajjanhar, Jyotsna Batra, Chenwei Wang, Colleen C. Nelson. J-Circos: an interactive Circos plotter |
| 1466 | -- | 1468 | Jack Euesden, Cathryn M. Lewis, Paul F. O'Reilly. PRSice: Polygenic Risk Score software |
| 1469 | -- | 1471 | John C. Mu, Marghoob Mohiyuddin, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. Wong, Hugo Y. K. Lam. VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications |
| 1472 | -- | 1474 | Hyejin Yoon, Thomas Leitner. PrimerDesign-M: a multiple-alignment based multiple-primer design tool for walking across variable genomes |
| 1475 | -- | 1477 | Ogun Adebali, Davi R. Ortega, Igor B. Zhulin. CDvist: a webserver for identification and visualization of conserved domains in protein sequences |
| 1478 | -- | 1480 | Benoist Laurent, Matthieu Chavent, Tristan Cragnolini, Anna Caroline E. Dahl, Samuela Pasquali, Philippe Derreumaux, Mark S. P. Sansom, Marc Baaden. Epock: rapid analysis of protein pocket dynamics |
| 1481 | -- | 1483 | Edrisse Chermak, Andrea Petta, Luigi Serra, Anna Vangone, Vittorio Scarano, Luigi Cavallo, Romina Oliva. CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts |
| 1484 | -- | 1486 | Jonathan E. Chen, Conrad C. Huang, Thomas E. Ferrin. RRDistMaps: a UCSF Chimera tool for viewing and comparing protein distance maps |
| 1487 | -- | 1489 | Eran Eyal, Gengkon Lum, Ivet Bahar. The anisotropic network model web server at 2015 (ANM 2.0) |
| 1490 | -- | 1492 | Guillaume Bouvier, Nathan Desdouits, Mathias Ferber, Arnaud Blondel, Michael Nilges. An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps |
| 1493 | -- | 1495 | Franck Giacomoni, Gildas Le Corguillé, Misharl Monsoor, Marion Landi, Pierre Pericard, Mélanie Pétéra, Christophe Duperier, Marie Tremblay-Franco, Jean-François Martin, Daniel Jacob, Sophie Goulitquer, Etienne A. Thévenot, Christophe Caron. Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics |
| 1496 | -- | 1498 | Andrew S. Warren, Cristina Aurrecoechea, Brian P. Brunk, Prerak Desai, Scott J. Emrich, Gloria I. Giraldo-Calderón, Omar S. Harb, Deborah Hix, Daniel Lawson, Dustin Machi, Chunhong Mao, Michael McClelland, Eric K. Nordberg, Maulik Shukla, Leslie B. Vosshall, Alice R. Wattam, Rebecca Will, Hyun Seung Yoo, Bruno W. S. Sobral. RNA-Rocket: an RNA-Seq analysis resource for infectious disease research |
| 1499 | -- | 1501 | Oriol Guitart Pla, Manjunath Kustagi, Frank Rügheimer, Andrea Califano, Benno Schwikowski. The Cyni framework for network inference in Cytoscape |
| 1502 | -- | 1504 | Thanasis Vergoulis, Ilias Kanellos, Nikos Kostoulas, Georgios Georgakilas, Timos Sellis, Artemis G. Hatzigeorgiou, Theodore Dalamagas. mirPub: a database for searching microRNA publications |
| 1505 | -- | 1507 | Diana M. Hendrickx, Hugo J. W. L. Aerts, Florian Caiment, Dominic Clark, Timothy M. D. Ebbels, Chris T. A. Evelo, Hans Gmuender, Dennie G. A. J. Hebels, Ralf Herwig, Jürgen Hescheler, Danyel G. J. Jennen, Marlon J. A. Jetten, Stathis Kanterakis, Hector C. Keun, Vera Matser, John P. Overington, Ekaterina Pilicheva, Ugis Sarkans, Marcelo P. Segura-Lepe, Isaia Sotiriadou, Timo Wittenberger, Clemens Wittwehr, Antonella Zanzi, Jos C. S. Kleinjans. diXa: a data infrastructure for chemical safety assessment |
| 1508 | -- | 1514 | Euna Jeong, Ningning He, Hyerin Park, Mee Song, Nayoung Kim, Seong Joon Lee, Sukjoon Yoon. MACE: mutation-oriented profiling of chemical response and gene expression in cancers |
| 1515 | -- | 1518 | Daniel Asarnow, Liliana Rojo-Arreola, Brian M. Suzuki, Conor R. Caffrey, Rahul Singh. The QDREC web server: determining dose-response characteristics of complex macroparasites in phenotypic drug screens |
| 1519 | -- | 1520 | Agnieszka Prochenka, Piotr Pokarowski, Piotr Gasperowicz, Joanna Kosinska, Piotr Stawinski, Renata Zbiec-Piekarska, Magdalena Spólnicka, Wojciech Branicki, Rafal Ploski. A cautionary note on using binary calls for analysis of DNA methylation |