Journal: Bioinformatics

Volume 33, Issue 12

1751 -- 1757Hashem A. Shihab, Mark F. Rogers, Colin Campbell, Tom R. Gaunt. HIPred: an integrative approach to predicting haploinsufficient genes
1758 -- 1764Feng-Biao Guo, Chuan Dong, Hong-Li Hua, Shuo Liu, Hao Luo, Hong-Wan Zhang, Yan-Ting Jin, Kai-Yue Zhang. Accurate prediction of human essential genes using only nucleotide composition and association information
1765 -- 1772Hokeun Sun, Ya Wang, Yong Chen, Yun Li, Shuang Wang. pETM: a penalized Exponential Tilt Model for analysis of correlated high-dimensional DNA methylation data
1773 -- 1781Ralph Patrick, Bostjan Kobe, Kim-Anh Lê Cao, Mikael Bodén. PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation
1782 -- 1788Erdi Kucuk, Justin Chu, Benjamin P. Vandervalk, S. Austin Hammond, René L. Warren, Inanç Birol. Kollector: transcript-informed, targeted de novo assembly of gene loci
1789 -- 1797Jingwen Pei, Yufeng Wu. STELLS2: fast and accurate coalescent-based maximum likelihood inference of species trees from gene tree topologies
1798 -- 1805Guy Baele, Philippe Lemey, Andrew Rambaut, Marc A. Suchard. Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST
1806 -- 1813Iain H. Moal, Didier Barradas-Bautista, Brian Jiménez-García, Mieczyslaw Torchala, Arjan van der Velde, Thom Vreven, Zhiping Weng, Paul A. Bates, Juan Fernández-Recio. IRaPPA: information retrieval based integration of biophysical models for protein assembly selection
1814 -- 1819Yina Gu, Da-wei Li, Rafael Brüschweiler. Statistical database analysis of the role of loop dynamics for protein-protein complex formation and allostery
1820 -- 1828Felipe Llinares-López, Laetitia Papaxanthos, Dean A. Bodenham, Damian Roqueiro, COPDGene Investigators, Karsten M. Borgwardt. Genome-wide genetic heterogeneity discovery with categorical covariates
1829 -- 1836Biaobin Jiang, Kyle Kloster, David F. Gleich, Michael Gribskov. AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs
1837 -- 1844Evi Berchtold, Gergely Csaba, Ralf Zimmer. RelExplain - integrating data and networks to explain biological processes
1845 -- 1851Claudia Hernandez-Armenta, David Ochoa, Emanuel J. V. Gonçalves, Julio Saez-Rodriguez, Pedro Beltrao. Benchmarking substrate-based kinase activity inference using phosphoproteomic data
1852 -- 1858Juan Miguel Cejuela, Aleksandar Bojchevski, Carsten Uhlig, Rustem Bekmukhametov, Sanjeev Kumar Karn, Shpend Mahmuti, Ashish Baghudana, Ankit Dubey, Venkata P. Satagopam, Burkhard Rost. nala: text mining natural language mutation mentions
1859 -- 1866Lu Wang, Daniele Durante, Rex E. Jung, David B. Dunson. Bayesian network-response regression
1867 -- 1869Brent S. Pedersen, Aaron R. Quinlan. cyvcf2: fast, flexible variant analysis with Python
1870 -- 1872Elior Rahmani, Reut Yedidim, Liat Shenhav, Regev Schweiger, Omer Weissbrod, Noah Zaitlen, Eran Halperin. GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data
1873 -- 1875Wei-Zhi Song, Torsten Thomas. Binning_refiner: improving genome bins through the combination of different binning programs
1876 -- 1878Adam Price, Cynthia Gibas. Simulome: a genome sequence and variant simulator
1879 -- 1880Simone Marini, Nelson Nazzicari, Filippo Biscarini, Guang-Zhong Wang. Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity
1881 -- 1882Yuanqiang Zou, Zhiqiang Wu, Lizong Deng, Aiping Wu, Fan Wu, Kenli Li, Taijiao Jiang, Yousong Peng. cooccurNet: an R package for co-occurrence network construction and analysis
1883 -- 1885André R. F. Silva, Diogo B. Lima, Alejandro Leyva, Rosario Duran, Carlos Batthyany, Priscila F. Aquino, Juliana C. Leal, Jimmy E. Rodriguez, Gilberto B. Domont, Marlon D. M. Santos, Julia Chamot-Rooke, Valmir C. Barbosa, Paulo C. Carvalho. DiagnoProt: a tool for discovery of new molecules by mass spectrometry
1886 -- 1888Joseph W. Brown, Joseph F. Walker, Stephen A. Smith. Phyx: phylogenetic tools for unix
1889 -- 1891Damiano Piovesan, Ian Walsh, Giovanni Minervini, Silvio C. E. Tosatto. FELLS: fast estimator of latent local structure
1892 -- 1894Genevieve L. Stein-O'Brien, Jacob L. Carey, Waishing Lee, Michael Considine, Alexander V. Favorov, Emily Flam, Theresa Guo, Sijia Li, Luigi Marchionni, Thomas Sherman, Shawn Sivy, Daria A. Gaykalova, Ronald McKay, Michael F. Ochs, Carlo Colantuoni, Elana J. Fertig. PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF
1895 -- 1897Alexandre Fort, Nikolaos I. Panousis, Marco Garieri, Stylianos E. Antonarakis, Tuuli Lappalainen, Emmanouil T. Dermitzakis, Olivier Delaneau. MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets
1898 -- 1899Ramón Díaz-Uriarte. OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations
1900 -- 1901Victor Trevino, José G. Tamez-Peña. VALORATE: fast and accurate log-rank test in balanced and unbalanced comparisons of survival curves and cancer genomics
1902 -- 1904Kevin Titeca, Pieter Meysman, Kris Laukens, Lennart Martens, Jan Tavernier, Sven Eyckerman. sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets
1905 -- 1906Daniel Cuevas, Robert A. Edwards. PMAnalyzer: a new web interface for bacterial growth curve analysis
1907 -- 1909Ilan Y. Smoly, Eugene Lerman, Michal Ziv-Ukelson, Esti Yeger Lotem. MotifNet: a web-server for network motif analysis