| 2251 | -- | 2257 | Xiuwen Zheng, Stephanie M. Gogarten, Michael F. Lawrence, Adrienne Stilp, Matthew P. Conomos, Bruce S. Weir, Cathy C. Laurie, David Levine. SeqArray - a storage-efficient high-performance data format for WGS variant calls |
| 2258 | -- | 2265 | Georg Stricker, Alexander Engelhardt, Daniel Schulz, Matthias Schmid, Achim Tresch, Julien Gagneur. GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis |
| 2266 | -- | 2272 | Maximilian Knoll, Jürgen Debus, Amir Abdollahi. cnAnalysis450k: an R package for comparative analysis of 450k/EPIC Illumina methylation array derived copy number data |
| 2273 | -- | 2280 | Zhicong Huang, Huang Lin, Jacques Fellay, Zoltan Kutalik, Jean-Pierre Hubaux. SQC: secure quality control for meta-analysis of genome-wide association studies |
| 2281 | -- | 2287 | Hsin-Nan Lin, Wen-Lian Hsu. Kart: a divide-and-conquer algorithm for NGS read alignment |
| 2288 | -- | 2295 | Shuxiang Ruan, S. Joshua Swamidass, Gary D. Stormo. BEESEM: estimation of binding energy models using HT-SELEX data |
| 2296 | -- | 2306 | Baoji He, S. M. Mortuza, Yanting Wang, Hong-bin Shen, Yang Zhang. NeBcon: protein contact map prediction using neural network training coupled with naïve Bayes classifiers |
| 2307 | -- | 2313 | Robert Brown, Gleb Kichaev, Nicholas Mancuso, James Boocock, Bogdan Pasaniuc. Enhanced methods to detect haplotypic effects on gene expression |
| 2314 | -- | 2321 | Hirotaka Matsumoto, Hisanori Kiryu, Chikara Furusawa, Minoru S. H. Ko, Shigeru B. H. Ko, Norio Gouda, Tetsutaro Hayashi, Itoshi Nikaido. SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation |
| 2322 | -- | 2329 | Steven H. Wu, Rachel Schwartz, David J. Winter, Donald F. Conrad, Reed A. Cartwright. Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions |
| 2330 | -- | 2336 | Maggie Haitian Wang, Haoyi Weng, Rui Sun, Jack Lee, William Ka Kei Wu, Ka Chun Chong, Benny Zee. A Zoom-Focus algorithm (ZFA) to locate the optimal testing region for rare variant association tests |
| 2337 | -- | 2344 | Nansu Zong, Hyeoneui Kim, Victoria Ngo, Olivier Harismendy. Deep mining heterogeneous networks of biomedical linked data to predict novel drug-target associations |
| 2345 | -- | 2353 | Hyun-Seob Song, Noam Goldberg, Ashutosh Mahajan, Doraiswami Ramkrishna. Sequential computation of elementary modes and minimal cut sets in genome-scale metabolic networks using alternate integer linear programming |
| 2354 | -- | 2362 | Cheng-Hong Yang, Li-Yeh Chuang, Yu-Da Lin. CMDR based differential evolution identifies the epistatic interaction in genome-wide association studies |
| 2363 | -- | 2371 | Yinxia Lou, Yue Zhang, Tao Qian, Fei Li, Shufeng Xiong, Donghong Ji. A transition-based joint model for disease named entity recognition and normalization |
| 2372 | -- | 2378 | Weijia Zhang, Thuc Duy Le, Lin Liu 0003, Zhi-Hua Zhou, Jiuyong Li. Mining heterogeneous causal effects for personalized cancer treatment |
| 2379 | -- | 2380 | Yosuke Nishimura, Takashi Yoshida, Megumi Kuronishi, Hideya Uehara, Hiroyuki Ogata, Susumu Goto. ViPTree: the viral proteomic tree server |
| 2381 | -- | 2383 | Raymond G. Cavalcante, Maureen A. Sartor. annotatr: genomic regions in context |
| 2384 | -- | 2385 | Feifei Xiao, Yue Niu, Ning Hao, Yanxun Xu, Zhilin Jin, Heping Zhang. modSaRa: a computationally efficient R package for CNV identification |
| 2386 | -- | 2388 | Andrew J. Gartland, Nicholas Kullman, Allan C. deCamp, Graham Clenaghan, Wayne Yang, Craig A. Magaret, Paul Thatcher Edlefsen, Peter B. Gilbert. SieveSifter: a web-based tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials |
| 2389 | -- | 2391 | Pedro J. Torres, Robert A. Edwards, Katelyn McNair. PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive |
| 2392 | -- | 2394 | Timothy G. Vaughan. IcyTree: rapid browser-based visualization for phylogenetic trees and networks |
| 2395 | -- | 2396 | Inanc Soylu, Stefano M. Marino. Cpipe: a comprehensive computational platform for sequence and structure-based analyses of Cysteine residues |
| 2397 | -- | 2398 | Noé Fernández-Pozo, Yi Zheng, Stephen I. Snyder, Philippe Nicolas, Yoshihito Shinozaki, Zhangjun Fei, Carmen Catala, James J. Giovannoni, Jocelyn K. C. Rose, Lukas A. Mueller. The Tomato Expression Atlas |
| 2399 | -- | 2401 | Jing Wang, David C. Samuels, Yu Shyr, Yan Guo. StrandScript: evaluation of Illumina genotyping array design and strand correction |
| 2402 | -- | 2404 | Alessandro Romanel, Tuo Zhang, Olivier Elemento, Francesca Demichelis. EthSEQ: ethnicity annotation from whole exome sequencing data |
| 2405 | -- | 2407 | Matti Pirinen, Christian Benner, Pekka Marttinen, Marjo-Riitta Järvelin, Manuel A. Rivas, Samuli Ripatti. biMM: efficient estimation of genetic variances and covariances for cohorts with high-dimensional phenotype measurements |
| 2408 | -- | 2409 | Zhiqiang Hu, Chen Sun, Kuang-chen Lu, Xixia Chu, Yue Zhao, Jinyuan Lu, Jianxin Shi, Chaochun Wei. EUPAN enables pan-genome studies of a large number of eukaryotic genomes |
| 2410 | -- | 2412 | Åsmund Flobak, Miguel Vazquez, Astrid Lægreid, Alfonso Valencia. CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets |
| 2413 | -- | 2415 | Aleksandr Ianevski, Liye He, Tero Aittokallio, Jing Tang. SynergyFinder: a web application for analyzing drug combination dose-response matrix data |
| 2416 | -- | 2418 | Michael B. Mundy, Helena Mendes-Soares, Nicholas Chia. Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models |
| 2419 | -- | 2420 | Thomas Naake, Emmanuel Gaquerel. MetCirc: navigating mass spectral similarity in high-resolution MS/MS metabolomics data |
| 2421 | -- | 2423 | Nikolas Pontikos, Jing Yu, Ismail Moghul, Lucy Withington, Fiona Blanco-Kelly, Tom Vulliamy, Tsz Lun Ernest Wong, Cian Murphy, Valentina Cipriani, Alessia Fiorentino, Gavin Arno, Daniel Greene, Julius O. B. Jacobsen, Tristan Clark, David S. Gregory, Andrea M. Nemeth, Stephanie Halford, Chris F. Inglehearn, Susan Downes, Graeme C. Black, Andrew R. Webster, Alison J. Hardcastle, Ukirdc, Vincent Plagnol. Phenopolis: an open platform for harmonization and analysis of genetic and phenotypic data |
| 2424 | -- | 2426 | Ignacio Arganda-Carreras, Verena Kaynig, Curtis Rueden, Kevin W. Eliceiri, Johannes E. Schindelin, Albert Cardona, H. Sebastian Seung. Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification |
| 2427 | -- | 2428 | Pere Ràfols, Sonia Torres, Noelia Ramírez, Esteban del Castillo, Oscar Yanes, Jesús Brezmes, Xavier Correig. rMSI: an R package for MS imaging data handling and visualization |
| 2429 | -- | 2430 | Kieran O'Neill, Vivek Rai, Alastair M. Kilpatrick. The International Society for Computational Biology and WikiProject Computational Biology: celebrating 10 years of collaboration towards open access |