Journal: PLoS Computational Biology

Volume 12, Issue 5

0 -- 0Sid Henriksen, Bruce G. Cumming, Jenny C. A. Read. A Single Mechanism Can Account for Human Perception of Depth in Mixed Correlation Random Dot Stereograms
0 -- 0Erik van Nimwegen. Inferring Contacting Residues within and between Proteins: What Do the Probabilities Mean?
0 -- 0John Wiedenhoeft, Eric Brugel, Alexander Schliep. Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression
0 -- 0Lonnie R. Welch, Cath Brooksbank, Russell Schwartz, Sarah L. Morgan, Bruno A. Gaëta, Alastair M. Kilpatrick, Daniel Mietchen, Benjamin L. Moore, Nicola J. Mulder, Mark Pauley, William Pearson, Predrag Radivojac, Naomi Rosenberg, Anne G. Rosenwald, Gabriella Rustici, Tandy J. Warnow. Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee)
0 -- 0Jerome Kelleher, Alison M. Etheridge, Gilean McVean. Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes
0 -- 0Philip J. Tully, Henrik Lindén, Matthias H. Hennig, Anders Lansner. Spike-Based Bayesian-Hebbian Learning of Temporal Sequences
0 -- 0Jaroslav Bendl, Milos Musil, Jan Stourac, Jaroslav Zendulka, Jirí Damborský, Jan Brezovsky. PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions
0 -- 0Jared Markowitz, Hugh Herr. Human Leg Model Predicts Muscle Forces, States, and Energetics during Walking
0 -- 0Song Feng, Julien F. Ollivier, Orkun S. Soyer. Enzyme Sequestration as a Tuning Point in Controlling Response Dynamics of Signalling Networks
0 -- 0Zizhang Sheng, Chaim A. Schramm, Mark Connors, Lynn Morris, John R. Mascola, Peter D. Kwong, Lawrence Shapiro. Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection
0 -- 0Alex J. Cope, Chelsea Sabo, Kevin N. Gurney, Eleni Vasilaki, James A. R. Marshall. A Model for an Angular Velocity-Tuned Motion Detector Accounting for Deviations in the Corridor-Centering Response of the Bee
0 -- 0Pascal Giehr, Charalampos Kyriakopoulos, Gabriella Ficz, Verena Wolf, Jörn Walter. The Influence of Hydroxylation on Maintaining CpG Methylation Patterns: A Hidden Markov Model Approach
0 -- 0Shashaank Vattikuti, Phyllis Thangaraj, Hua W. Xie, Stephen J. Gotts, Alex Martin, Carson C. Chow. Canonical Cortical Circuit Model Explains Rivalry, Intermittent Rivalry, and Rivalry Memory
0 -- 0Alex D. Bird, Hermann Cuntz. Optimal Current Transfer in Dendrites
0 -- 0Erik Aurell. The Maximum Entropy Fallacy Redux?
0 -- 0Mark K. Transtrum, Peng Qiu. Bridging Mechanistic and Phenomenological Models of Complex Biological Systems
0 -- 0Maxim Grechkin, Benjamin A. Logsdon, Andrew J. Gentles, Su-In Lee. Identifying Network Perturbation in Cancer
0 -- 0Thomas Heiberg, Espen Hagen, Geir Halnes, Gaute T. Einevoll. Biophysical Network Modelling of the dLGN Circuit: Different Effects of Triadic and Axonal Inhibition on Visual Responses of Relay Cells
0 -- 0Wenchao Zhang, Xinbin Dai, Qishan Wang, Shizhong Xu, Patrick Xuechun Zhao. PEPIS: A Pipeline for Estimating Epistatic Effects in Quantitative Trait Locus Mapping and Genome-Wide Association Studies
0 -- 0David L. Masica, Rachel Karchin. Towards Increasing the Clinical Relevance of In Silico Methods to Predict Pathogenic Missense Variants
0 -- 0Anwesha Bohler, Guanming Wu, Martina Kutmon, Leontius Adhika Pradhana, Susan L. Coort, Kristina Hanspers, Robin Haw, Alexander R. Pico, Chris T. A. Evelo. Reactome from a WikiPathways Perspective
0 -- 0Hagai Lalazar, L. F. Abbott, Eilon Vaadia. Tuning Curves for Arm Posture Control in Motor Cortex Are Consistent with Random Connectivity
0 -- 0Ana Zafra Ruano, Elisa Cilia, José R. Couceiro, Javier Ruiz Sanz, Joost Schymkowitz, Frederic Rousseau, Irene Luque, Tom Lenaerts. From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors
0 -- 0Tuoqi Liu, Jiajun Zhang, Tianshou Zhou. Effect of Interaction between Chromatin Loops on Cell-to-Cell Variability in Gene Expression
0 -- 0Hannah E. Clapham, Than Ha Quyen, Duong Thi Hue Kien, Ilaria Dorigatti, Cameron P. Simmons, Neil M. Ferguson. Modelling Virus and Antibody Dynamics during Dengue Virus Infection Suggests a Role for Antibody in Virus Clearance
0 -- 0Nicholas Timme, Shinya Ito, Maxym Myroshnychenko, Sunny Nigam, Masanori Shimono, Fang-Chin Yeh, Pawel Hottowy, Alan M. Litke, John M. Beggs. High-Degree Neurons Feed Cortical Computations
0 -- 0Lisa M. Breckels, Sean B. Holden, David Wojnar, Claire M. Mulvey, Andy Christoforou, Arnoud Groen, Matthew W. B. Trotter, Oliver Kohlbacher, Kathryn S. Lilley, Laurent Gatto. Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics
0 -- 0Pengfei Tian, Robert B. Best. Structural Determinants of Misfolding in Multidomain Proteins
0 -- 0Joseph H. R. Hetmanski, Egor Zindy, Jean-Marc Schwartz, Patrick T. Caswell. A MAPK-Driven Feedback Loop Suppresses Rac Activity to Promote RhoA-Driven Cancer Cell Invasion
0 -- 0Jian Sun, James B. Hoying, Pierre Deymier, Donna D. Zhang, Pak-Kin Wong. Cellular Architecture Regulates Collective Calcium Signaling and Cell Contractility
0 -- 0Andrew F. Neuwald, Stephen F. Altschul. Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties
0 -- 0Hugo Jacquin, Amy Gilson, Eugene I. Shakhnovich, Simona Cocco, Rémi Monasson. Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable Models
0 -- 0Josh Merel, David E. Carlson, Liam Paninski, John P. Cunningham. Neuroprosthetic Decoder Training as Imitation Learning
0 -- 0Thom Griffith, Krasimira Tsaneva-Atanasova, Jack Mellor. Control of Ca2+ Influx and Calmodulin Activation by SK-Channels in Dendritic Spines
0 -- 0Joachim Hass, Loreen Hertäg, Daniel Durstewitz. A Detailed Data-Driven Network Model of Prefrontal Cortex Reproduces Key Features of In Vivo Activity
0 -- 0Luke I. Rast, Igor M. Rouzine, Ganna Rozhnova, Lisa Bishop, Ariel D. Weinberger, Leor S. Weinberger. Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals
0 -- 0Benny Borremans, Niel Hens, Philippe Beutels, Herwig Leirs, Jonas Reijniers. Estimating Time of Infection Using Prior Serological and Individual Information Can Greatly Improve Incidence Estimation of Human and Wildlife Infections
0 -- 0Yougan Cheng, Hans Othmer. A Model for Direction Sensing in Dictyostelium discoideum: Ras Activity and Symmetry Breaking Driven by a Gβγ-Mediated, Gα2-Ric8 - Dependent Signal Transduction Network
0 -- 0Tetsuro Funato, Yuki Yamamoto, Shinya Aoi, Takashi Imai, Toshio Aoyagi, Nozomi Tomita, Kazuo Tsuchiya. Evaluation of the Phase-Dependent Rhythm Control of Human Walking Using Phase Response Curves
0 -- 0Natalie S. Scholes, Robert O. J. Weinzierl. Molecular Dynamics of "Fuzzy" Transcriptional Activator-Coactivator Interactions
0 -- 0Arthur Bernard, Jean-Baptiste André, Nicolas Bredèche. To Cooperate or Not to Cooperate: Why Behavioural Mechanisms Matter
0 -- 0Kit Curtius, Chao-Jen Wong, William D. Hazelton, Andrew M. Kaz, Amitabh Chak, Joseph E. Willis, William M. Grady, E. Georg Luebeck. A Molecular Clock Infers Heterogeneous Tissue Age Among Patients with Barrett's Esophagus
0 -- 0Raphaël Mourad, Olivier Cuvier. Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation