Pirooz Vakili - researchr alias

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Viewing Publication 1 - 35 from 35

2016

Focused grid-based resampling for protein docking and mappingArtem B. Mamonov, Mohammad Moghadasi, Hanieh Mirzaei, Shahrooz Zarbafian, Laurie E. Grove, Tanggis Bohnuud, Pirooz Vakili, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov. jcc, 37(11):961-970, 2016. [doi]

2015

The Impact of Side-Chain Packing on Protein Docking RefinementMohammad Moghadasi, Hanieh Mirzaei, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis, Dima Kozakov. jcisd, 55(4):872-881, 2015. [doi]

2014

A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein dockingFeng Nan, Mohammad Moghadasi, Pirooz Vakili, Sandor Vajda, Dima Kozakov, Ioannis Ch. Paschalidis. cdc 2014: 4623-4628 [doi]

Optimization on the space of rigid and flexible motions: An alternative manifold optimization approachPirooz Vakili, Hanieh Mirzaei, Shahrooz Zarbafian, Ioannis Ch. Paschalidis, Dima Kozakov, Sandor Vajda. cdc 2014: 5825-5830 [doi]

2013

Flexible refinement of protein-ligand docking on manifoldsHanieh Mirzaei, Elizabeth A. Villar, Scott E. Mottarella, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov, Pirooz Vakili. cdc 2013: 1392-1397 [doi]

A new distributed algorithm for side-chain positioning in the process of protein dockingMohammad Moghadasi, Dima Kozakov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis. cdc 2013: 739-744 [doi]

2012

A new approach to rigid body minimization with application to molecular dockingHanieh Mirzaei, Dima Kozakov, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Pirooz Vakili. cdc 2012: 2983-2988 [doi]

A message passing approach to Side Chain Positioning with applications in protein docking refinementMohammad Moghadasi, Dima Kozakov, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis. cdc 2012: 2310-2315 [doi]

2010

Control variates for sensitivity estimationTarik Borogovac, Na Sun, Pirooz Vakili. wsc 2010: 2629-2641 [doi]

Importance sampling for parametric estimationXiaojin Tang, Pirooz Vakili. wsc 2010: 2666-2677 [doi]

2008

Control variate technique: A constructive approachTarik Borogovac, Pirooz Vakili. wsc 2008: 320-327 [doi]

Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter ComplexesYang Shen, Ioannis Ch. Paschalidis, Pirooz Vakili, Sandor Vajda. ploscb, 4(10), 2008. [doi]

Monotonicity and stratificationGang Zhao, Pirooz Vakili. wsc 2008: 313-319 [doi]

2007

2006

Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnelsIoannis Ch. Paschalidis, Yang Shen, Pirooz Vakili, Sandor Vajda. embc 2006: 5330-5333 [doi]

A new efficient simulation strategy for pricing path-dependent optionsGang Zhao, Yakun Zhou, Pirooz Vakili. wsc 2006: 703-710 [doi]

2005

A Semi-Definite programming-based Underestimation method for global optimization in molecular dockingIoannis Ch. Paschalidis, Yang Shen, Sandor Vajda, Pirooz Vakili. cdc 2005: 3675-3680 [doi]

On the Value of Flexibility in R&D ProjectsLeonardo P. Santiago, Pirooz Vakili. mansci, 51(8):1206-1218, 2005. [doi]

2004

2001

Optimal allocation of heterogeneous resources: a control-theoretic approachYanfeng Wang, James R. Perkins, Pirooz Vakili, Anil Khurana. cdc 2001: 1953-1958 [doi]

1999

Optimality of index policies for a sequential sampling problemDavid A. Castañon, Simon Streltsov, Pirooz Vakili. tac, 44(1):145-148, 1999. [doi]

A Non-myopic Utility Function for Statistical Global Optimization AlgorithmsSimon Streltsov, Pirooz Vakili. jgo, 14(3):283-298, 1999. [doi]

1996

Variance reduction algorithms for parallel replicated simulation of uniformized Markov chainsSimon Streltsov, Pirooz Vakili. deds, 6(2):159-180, 1996. [doi]

Periodic and chaotic dynamics of a switched-server system under corridor policiesGuo-Xiang Yu, Pirooz Vakili. tac, 41(4):584-588, 1996. [doi]

1995

Variance Reduction for Discrete Event Systems Driven by Poisson ProcessesPirooz Vakili. wsc 1995: 278-284 [doi]

1994

Optimality of hedging point policies in the production control of failure prone manufacturing systemsJian-Qiang Hu, Pirooz Vakili, Guo-Xiang Yu. tac, 39(9):1875-1880, 1994. [doi]

Uniformization based sensitivity estimation for a class of discrete-event systemsPirooz Vakili, Guo-Xiang Yu. deds, 4(2):171-195, 1994. [doi]

1993

Parallel replicated simulation of Markov chains: implementation and variance reductionSimon Streltsov, Pirooz Vakili. wsc 1993: 430-436 [doi]

1992

Correlation of Markov Chains Simulated in ParallelPaul Glasserman, Pirooz Vakili. wsc 1992: 475-482 [doi]

Massively Parallel and Distributed Simulation of a Class of Discrete Event Systems: A Different PerspectivePirooz Vakili. tomacs, 2(3):214-238, 1992. [doi]

1991

Using a standard clock technique for efficient simulationPirooz Vakili. orl, 10(8):445-452, 1991. [doi]

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