Journal: Bioinformatics

Volume 19, Issue 5

549 -- 552Subbaya Subramanian, Vamsi M. Madgula, Ranjan George, Rakesh K. Mishra, Madhusudhan W. Pandit, Chanderashekar S. Kumar, Lalji Singh. Triplet repeats in human genome: distribution and their association with genes and other genomic regions
553 -- 562Jesús Angulo, Jean Serra. Automatic analysis of DNA microarray images using mathematical morphology
563 -- 570A. Antoniadis, S. Lambert-Lacroix, F. Leblanc. Effective dimension reduction methods for tumor classification using gene expression data
571 -- 578Silvio Bicciato, A. Luchini, Carlo Di Bello. PCA disjoint models for multiclass cancer analysis using gene expression data
579 -- 586Gernot G. Presting. Mapping multiple co-sequenced T-DNA integration sites within the Arabidopsis genome
587 -- 592Angela Torres, Juan J. Nieto. The fuzzy polynucleotide space: basic properties
593 -- 599Chun-Ting Zhang, Ren Zhang, Hong-Yu Ou. The Z curve database: a graphic representation of genome sequences
600 -- 606David S. Horner, Graziano Pesole. The estimation of relative site variability among aligned homologous protein sequences
607 -- 617Konstantinos Blekas, Dimitrios I. Fotiadis, Aristidis Likas. Greedy mixture learning for multiple motif discovery in biological sequences
618 -- 624Stéphane Aris-Brosou. How Bayes tests of molecular phylogenies compare with frequentist approaches
625 -- 634Andrew I. Jewett, Conrad C. Huang, Thomas E. Ferrin. MINRMS: an efficient algorithm for determining protein structure similarity using root-mean-squared-distance
635 -- 642Lars Juhl Jensen, Ramneek Gupta, Hans Henrik Stærfeldt, Søren Brunak. Prediction of human protein function according to Gene Ontology categories
643 -- 650Shinichi Kikuchi, Daisuke Tominaga, Masanori Arita, Katsutoshi Takahashi, Masaru Tomita. Dynamic modeling of genetic networks using genetic algorithm and S-system
651 -- 652Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
653 -- 654Jianxin Wang, Ping Liang. DigiNorthern, digital expression analysis of query genes based on ESTs
655 -- 656Javier Herrero, Ramón Díaz-Uriarte, Joaquín Dopazo. Gene expression data preprocessing
657 -- 658Jorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto D. Pascual-Montano. Engene: the processing and exploratory analysis of gene expression data
659 -- 660David Venet. MatArray: a Matlab toolbox for microarray data
661 -- 662Stefano Toppo, Nicola Cannata, Paolo Fontana, Chiara Romualdi, Paolo Laveder, Emanuela Bertocco, Gerolamo Lanfranchi, Giorgio Valle. TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts
663 -- 664K. Livingstone, L. Rieseberg. MENDB: a database of polymorphic loci from natural populations
665 -- 666Manoj Bhasin, Harpreet Singh, G. P. S. Raghava. MHCBN: a comprehensive database of MHC binding and non-binding peptides
667 -- 668Ron Shigeta, Melissa S. Cline, Guoying Liu, Michael A. Siani-Rose. GPCR-GRAPA-LIB-a refined library of hidden Markov Models for annotating GPCRs
669 -- 670Gianmaria Mancosu, Giuseppe Ledda, Paola M. Melis. PedNavigator: a pedigree drawing servlet for large and inbred populations
671 -- 672Steve Woolley, Justin Johnson, Matthew J. Smith, Keith A. Crandall, David A. McClellan. TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees
673 -- 674Mikita Suyama, Osamu Ohara. DomCut: prediction of inter-domain linker regions in amino acid sequences
675 -- 676Andrew V. Kossenkov, Frank J. Manion, Eugene V. Korotkov, Thomas D. Moloshok, Michael F. Ochs. ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database
677 -- 678Bruce E. Shapiro, Andre Levchenko, Elliot M. Meyerowitz, Barbara J. Wold, Eric Mjolsness. Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations