| 3459 | -- | 3460 | Paul Spellman. A Status Report on Mage |
| 3461 | -- | 3468 | Xiaokang Pan, Lincoln Stein, Volker Brendel. SynBrowse: a synteny browser for comparative sequence analysis |
| 3469 | -- | 3474 | Kuo-Ho Yen, Chiang Lee, Hsiao-Sheng Liu, Chung-Liang Ho. A precise and scalable method for querying genes in chromosomal banding regions based on cytogenetic annotations |
| 3475 | -- | 3481 | Zhen-Ping Li, Wenfeng Zhou, Xiang-Sun Zhang, Luonan Chen. A parsimonious tree-grow method for haplotype inference |
| 3482 | -- | 3489 | Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh. The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships |
| 3490 | -- | 3500 | Didier Gonze, Sylvie Pinloche, Olivier Gascuel, Jacques van Helden. Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs |
| 3501 | -- | 3508 | Chun-Hsiang Huang, Chin Lung Lu, Hsien-Tai Chiu. A heuristic approach for detecting RNA H-type pseudoknots |
| 3509 | -- | 3515 | Chris S. Pettitt, Liam J. McGuffin, David T. Jones. Improving sequence-based fold recognition by using 3D model quality assessment |
| 3516 | -- | 3523 | Jens Reeder, Robert Giegerich. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction |
| 3524 | -- | 3529 | Jianhua Hu, Mini Kapoor, Wei Zhang, Stanley R. Hamilton, Kevin R. Coombes. Analysis of dose-response effects on gene expression data with comparison of two microarray platforms |
| 3530 | -- | 3534 | Kenneth A. Krohn, M. Eszlinger, R. Paschke, I. Roeder, E. Schuster. Increased power of microarray analysis by use of an algorithm based on a multivariate procedure |
| 3535 | -- | 3540 | R. E. Myers, C. V. Gale, A. Harrison, Y. Takeuchi, P. Kellam. A statistical model for HIV-1 sequence classification using the subtype analyser (STAR) |
| 3541 | -- | 3547 | Niels Grabe, Karsten Neuber. A multicellular systems biology model predicts epidermal morphology, kinetics and Ca:::2+::: flow |
| 3548 | -- | 3557 | Denise Scholtens, Marc Vidal, Robert Gentleman. Local modeling of global interactome networks |
| 3558 | -- | 3564 | Vitaly A. Selivanov, Ludmilla E. Meshalkina, Olga N. Solovjeva, Philip W. Kuchel, Antonio Ramos-Montoya, German A. Kochetov, Paul W.-N. Lee, Marta Cascante. Rapid simulation and analysis of isotopomer distributions using constraints based on enzyme mechanisms: an example from HT29 cancer cells |
| 3565 | -- | 3567 | Katrin Hoffmann, Tom H. Lindner. easyLINKAGE-Plus--automated linkage analyses using large-scale SNP data |
| 3568 | -- | 3569 | Maike Tech, Nico Pfeifer, Burkhard Morgenstern, Peter Meinicke. TICO: a tool for improving predictions of prokaryotic translation initiation sites |
| 3570 | -- | 3571 | Kengo Kinoshita, Motonori Ota. P-cats: prediction of catalytic residues in proteins from their tertiary structures |
| 3572 | -- | 3574 | Falk Schreiber, Henning Schwöbbermeyer. MAVisto: a tool for the exploration of network motifs |
| 3575 | -- | 3577 | Gunnar Wrobel, Frédéric Chalmel, Michael Primig. goCluster integrates statistical analysis and functional interpretation of microarray expression data |
| 3578 | -- | 3579 | Amanda M. White, Don Simone Daly, Alan R. Willse, Miroslava Protic, Darrell P. Chandler. Automated Microarray Image Analysis Toolbox for MATLAB |
| 3580 | -- | 3581 | Ungsik Yu, Yoon Jeong Choi, Jung Kyoon Choi, Sangsoo Kim. TO-GO: a Java-based Gene Ontology navigation environment |
| 3582 | -- | 3583 | Núria Domedel-Puig, Lorenz Wernisch. Applying GIFT, a Gene Interactions Finder in Text, to fly literature |
| 3584 | -- | 3585 | Lennart Martens, Joël Vandekerckhove, Kris Gevaert. DBToolkit: processing protein databases for peptide-centric proteomics |