Journal: Patterns

Volume 5, Issue 9

101023 -- 0Ali Burak Ünal, Nico Pfeifer, Mete Akgün. A privacy-preserving approach for cloud-based protein fold recognition
101025 -- 0Parham Pourdavood, Michael Jacob. EEG spectral attractors identify a geometric core of brain dynamics
101027 -- 0Mel Andrews, Andrew Smart, Abeba Birhane. The reanimation of pseudoscience in machine learning and its ethical repercussions
101030 -- 0Da Wu, Jingye Yang, Kai Wang. Exploring the reversal curse and other deductive logical reasoning in BERT and GPT-based large language models
101038 -- 0Xun Lin, Wenzhong Tang, Haoran Wang, Yizhong Liu, Yakun Ju, Shuai Wang, Zitong Yu. Exposing image splicing traces in scientific publications via uncertainty-guided refinement
101039 -- 0Malachy Guzman, Brian Geuther, Gautam S. Sabnis, Vivek Kumar. Highly accurate and precise determination of mouse mass using computer vision
101040 -- 0Mol Mir, Stephanie H. Nowotarski. The stacking cell puzzle
101041 -- 0Marike L. Reimer, Sierra D. Kauer, Curtis A. Benson, Jared F. King, Siraj Patwa, Sarah Feng, Maile A. Estacion, Lakshmi Bangalore, Stephen G. Waxman, Andrew M. Tan. A FAIR, open-source virtual reality platform for dendritic spine analysis

Volume 5, Issue 8

101003 -- 0John J. Stephen, Padraig Carolan, Amy E. Krefman, Sanaz Sedaghat, Maxwell Mansolf, Norrina B. Allen, Denise M. Scholtens. psHarmonize: Facilitating reproducible large-scale pre-statistical data harmonization and documentation in R
101007 -- 0Wu Chen, Mingwei Liao, Shengda Bao, Sile An, Wenwei Li, Xin Liu, Ganghua Huang, Hui Gong, Qingming Luo, Chi Xiao, Anan Li. A hierarchically annotated dataset drives tangled filament recognition in digital neuron reconstruction
101011 -- 0Kenneth S. Kosik. Why brain organoids are not conscious yet
101021 -- 0Chen Qiao, Yuanhua Huang. Reliable imputation of spatial transcriptomes with uncertainty estimation and spatial regularization
101022 -- 0Shumin Li, JiaJun Ma, Tianyi Zhao, Yuran Jia, Bo Liu, Ruibang Luo, Yuanhua Huang. CellContrast: Reconstructing spatial relationships in single-cell RNA sequencing data via deep contrastive learning
101024 -- 0Torec T. Luik, Rodrigo Rosas-Bertolini, Eric A. J. Reits, Ron A. Hoebe, Przemek M. Krawczyk. BIOMERO: A scalable and extensible image analysis framework
101028 -- 0Kang Zhang, Hong-Yu Zhou, Daniel T. Baptista-Hon, Yuanxu Gao, Xiaohong Liu, Eric Oermann, Sheng Xu, Shengwei Jin, Jian Zhang, Zhuo Sun, Yun Yin, Ronald M. Razmi, Alexandre Loupy, Stephan Beck, Jia Qu, Joseph Wu. Concepts and applications of digital twins in healthcare and medicine
101029 -- 0Zixin Jiang, Bing Dong. Modularized neural network incorporating physical priors for future building energy modeling
101031 -- 0Dimitris Stripelis, Umang Gupta, Hamza Saleem, Nikhil J. Dhinagar, Tanmay Ghai, Chrysovalantis Anastasiou, Rafael Sanchez, Greg Ver Steeg, Srivatsan Ravi, Muhammad Naveed 0001, Paul M. Thompson, José Luis Ambite. A federated learning architecture for secure and private neuroimaging analysis
101043 -- 0Xiaozhi Fu. How deep can we decipher protein evolution with deep learning models
101044 -- 0Zixin Jiang, Bing Dong. Meet the authors: Zixin Jiang and Bing Dong

Volume 5, Issue 7

100974 -- 0Sarthak Pati, Sourav Kumar, Amokh Varma, Brandon Edwards, Charles Lu 0001, Liangqiong Qu, Justin J. Wang, Anantharaman Lakshminarayanan, Shih-Han Wang, Micah J. Sheller, Ken Chang, Praveer Singh, Daniel L. Rubin, Jayashree Kalpathy-Cramer, Spyridon Bakas. Privacy preservation for federated learning in health care
100985 -- 0Guangyu Wang, Kai Wang, Yuanxu Gao, Longbin Chen, Tianrun Gao, Yuanlin Ma, Zeyu Jiang, Guoxing Yang, Fajin Feng, Shuoping Zhang, Yifan Gu, Guangdong Liu, Lei Chen, Li-Shuang Ma, Ye Sang, Yanwen Xu, Ge Lin, Xiaohong Liu. A generalized AI system for human embryo selection covering the entire IVF cycle via multi-modal contrastive learning
100987 -- 0Kelly Rootes-Murdy, Sandeep R. Panta, Ross Kelly, Javier Tomas Romero, Yann Quidé, Murray J. Cairns, C. M. Loughland, Vaughan J. Carr, Stanley V. Catts, Assen Jablensky, Melissa J. Green, Frans Henskens, Dylan Kiltschewskij, Patricia T. Michie, Bryan J. Mowry, Christos Pantelis, Paul E. Rasser, William R. Reay, Ulrich Schall, Rodney J. Scott, Oliver J. Watkeys, Gloria M. P. Roberts, Philip B. Mitchell, Janice M. Fullerton, Bronwyn J. Overs, Masataka Kikuchi, Ryota Hashimoto, Junya Matsumoto, Masaki Fukunaga, Perminder S. Sachdev, Henry Brodaty, Wei Wen, Jiyang Jiang, Negar Fani, Timothy D. Ely, Adriana Lorio, Jennifer S. Stevens, Kerry J. Ressler, Tanja Jovanovic, Sanne J. H. van Rooij, Lydia M. Federmann, Christiane Jockwitz, Alexander Teumer, Andreas J. Forstner, Svenja Caspers, Sven Cichon, Sergey M. Plis, Anand D. Sarwate, Vince D. Calhoun. Cortical similarities in psychiatric and mood disorders identified in federated VBM analysis via COINSTAC
100989 -- 0Eivind Heggernes Ask, Astrid Tschan-Plessl, Hanna Julie Hoel, Arne Kolstad, Harald Holte, Karl-Johan Malmberg. MetaGate: Interactive analysis of high-dimensional cytometry data with metadata integration
100990 -- 0Samar Samir Khalil, Noha S. Tawfik, Marco Spruit. Federated learning for privacy-preserving depression detection with multilingual language models in social media posts
100992 -- 0Dimitrios I. Zaridis, Eugenia Mylona, Nikos Tsiknakis, Nikolaos S. Tachos, George K. Matsopoulos, Kostas Marias, Manolis Tsiknakis, Dimitrios I. Fotiadis. ProLesA-Net: A multi-channel 3D architecture for prostate MRI lesion segmentation with multi-scale channel and spatial attentions
101004 -- 0Hannah Sawall, Seraphim Alvanides. Embroidering the city map
101012 -- 0Guanqiao Shan, Yu Sun. The potential of self-supervised learning in embryo selection for IVF success
101020 -- 0Fernanda D. A. O. Matos, Gildo Girotto Junior, Ana de Medeiros Arnt, Adriana Lippi. A proposal in Brazil to use generative AI in education threatens quality and equity
101026 -- 0Guang Yang, Brandon Edwards, Spyridon Bakas, Qi Dou 0001, Daguang Xu, Xiaoxiao Li, Wanying Wang. Federated learning as a catalyst for digital healthcare innovations

Volume 5, Issue 6

100968 -- 0Rita González-Márquez, Luca Schmidt, Benjamin M. Schmidt, Philipp Berens, Dmitry Kobak. The landscape of biomedical research
100969 -- 0Jiawei Huang, Yuxuan Du, Andres Stucky, Kevin R. Kelly, Jiang F. Zhong, Fengzhu Sun. DeepDecon accurately estimates cancer cell fractions in bulk RNA-seq data
100970 -- 0Marino Gavidia, Hongling Zhu, Arthur N. Montanari, Jesús Fuentes, Cheng Cheng, Sergio Dubner, Martin Chames, Pierre Maison-Blanche, Md. Moklesur Rahman, Roberto Sassi, Fabio Badilini, Yinuo Jiang, Shengjun Zhang, Hai-Tao Zhang, Hao Du, Basi Teng, Ye Yuan, Guohua Wan, Zhouping Tang, Xin He, Xiaoyun Yang, Jorge Goncalves. Early warning of atrial fibrillation using deep learning
100971 -- 0Upol Ehsan, Mark O. Riedl. Explainability pitfalls: Beyond dark patterns in explainable AI
100972 -- 0Fabio Crameri, Sari Hason. Navigating color integrity in data visualization
100973 -- 0Ruoqi Liu, Pin-Yu Chen, Ping Zhang. CURE: A deep learning framework pre-trained on large-scale patient data for treatment effect estimation
100982 -- 0Taykhoom Dalal, Chirag J. Patel. PYPE: A pipeline for phenome-wide association and Mendelian randomization in investigator-driven biobank scale analysis
100983 -- 0Abdelrahman Sharafeldin, Nabil Imam, Hannah Choi. Active sensing with predictive coding and uncertainty minimization
100986 -- 0Seyednami Niyakan, Jianting Sheng, Yuliang Cao, Xiang Zhang, Zhan Xu, Ling Wu, Stephen T. C. Wong, Xiaoning Qian. MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance
100988 -- 0Peter S. Park, Simon Goldstein, Aidan O'Gara, Michael Chen, Dan Hendrycks. AI deception: A survey of examples, risks, and potential solutions
100991 -- 0Zhehuan Fan, Jie Yu, Xiang Zhang, Yijie Chen, Shihui Sun, Yuanyuan Zhang, Mingan Chen, Fu Xiao, Wenyong Wu, Xutong Li, Mingyue Zheng, Xiaomin Luo, Dingyan Wang. Reducing overconfident errors in molecular property classification using Posterior Network
100993 -- 0Rita González-Márquez, Philipp Berens, Dmitry Kobak. Meet the authors: Rita González-Márquez, Philipp Berens, and Dmitry Kobak
100994 -- 0Eve Richardson, Raphael Trevizani, Jason A. Greenbaum, Hannah Carter, Morten Nielsen 0001, Bjoern Peters. The receiver operating characteristic curve accurately assesses imbalanced datasets
101005 -- 0Sheng Li. Large pre-trained models for treatment effect estimation: Are we there yet?
101006 -- 0Fan Zhang, Daniel Kreuter, Yichen Chen, Sören Dittmer, Samuel Tull, Tolou Shadbahr, Martijn Schut, Folkert W. Asselbergs, Sujoy Kar, Suthesh Sivapalaratnam, Sophie Williams, Mickey Koh, Yvonne Henskens, Bart De Wit, Umberto D'alessandro, Bubacarr Bah, Ousman Secka, Parashkev Nachev, Rajeev Gupta, Sara Trompeter, Nancy Boeckx, Christine van Laer, Gordon A. Awandare, Kwabena Sarpong, Lucas Amenga-Etego, Mathie Leers, Mirelle Huijskens, Samuel McDermott, Willem H. Ouwehand, Jacobus Preller, James H. F. Rudd, John A. D. Aston, Carola-Bibiane Schönlieb, Nicholas S. Gleadall, Michael Roberts. Recent methodological advances in federated learning for healthcare
101008 -- 0Zhuokun Feng, Yuanyuan Fu, Youping Deng. Enhancing visibility and inclusivity of queer scientists to advance equality in academia
101009 -- 0Sam Freesun Friedman, Shaan Khurshid. Consider this a WARNing
101010 -- 0Emily Wong, Ryan J. Urbanowicz, Tiffani J. Bright, Nicholas P. Tatonetti, Yi-Wen Hsiao, Xiuzhen Huang, Jason H. Moore, Pei-Chen Peng. Advancing LGBTQ+ inclusion in STEM education and AI research

Volume 5, Issue 5

100955 -- 0Tong Xie, Yuwei Wan, Yufei Zhou, Wei Huang, Yixuan Liu, Qingyuan Linghu, Shaozhou Wang, Chunyu Kit, Clara Grazian, Wenjie Zhang 0001, Bram Hoex. Creation of a structured solar cell material dataset and performance prediction using large language models
100964 -- 0Lizhen Zhu, James Z. Wang 0001, Wonseuk Lee, Brad Wyble. Incorporating simulated spatial context information improves the effectiveness of contrastive learning models
100965 -- 0Yanzhi Wang, Jianxiao Wang, Feng Gao, Jie Song. Unveiling value patterns via deep reinforcement learning in heterogeneous data analytics
100966 -- 0Meera A. Desai, Irene V. Pasquetto, Abigail Z. Jacobs, Dallas Card. An archival perspective on pretraining data
100967 -- 0Sarah M. Burbach, Bryan Briney. Improving antibody language models with native pairing

Volume 5, Issue 4

100930 -- 0Gongshu Wang, Ning Jiang, Yunxiao Ma, Dingjie Suo, Tiantian Liu, Shintaro Funahashi, Tianyi Yan. Using a deep generation network reveals neuroanatomical specificity in hemispheres
100946 -- 0Lamin Juwara, Alaa El-Hussuna, Khaled El Emam. An evaluation of synthetic data augmentation for mitigating covariate bias in health data
100947 -- 0Debsindhu Bhowmik, Pei Zhang, Zachary R. Fox, Stephan Irle, John Gounley. Enhancing molecular design efficiency: Uniting language models and generative networks with genetic algorithms
100949 -- 0Yu-Ching Hsu, Yu-Chiao Chiu, Tzu-Pin Lu, Tzu-Hung Hsiao, Yidong Chen 0002. Predicting drug response through tumor deconvolution by cancer cell lines
100950 -- 0Xinmei Yuan, Jiangbiao He, Yutong Li, Yu Liu, Yifan Ma, Bo Bao, Leqi Gu, Lili Li, Hui Zhang, Yucheng Jin, Long Sun. Data-driven evaluation of electric vehicle energy consumption for generalizing standard testing to real-world driving
100951 -- 0Junyi Gao, Yinghao Zhu, Wenqing Wang, Zixiang Wang, Guiying Dong, Wen Tang, Hao Wang, Yasha Wang, Ewen M. Harrison, Liantao Ma. A comprehensive benchmark for COVID-19 predictive modeling using electronic health records in intensive care
100954 -- 0Khoi Minh Huynh, Wei-Tang Chang, Ye Wu 0001, Pew-Thian Yap. Optimal shrinkage denoising breaks the noise floor in high-resolution diffusion MRI

Volume 5, Issue 3

100915 -- 0Zehua Jing, Qianhua Zhu, Linxuan Li, Yue Xie, Xinchao Wu, Qi Fang, Bolin Yang, Baojun Dai, Xun Xu, Hailin Pan, Yinqi Bai. Spaco: A comprehensive tool for coloring spatial data at single-cell resolution
100924 -- 0Matthew J. Sniatynski, John A. Shepherd 0002, Lynne R. Wilkens, D. Frank Hsu, Bruce S. Kristal. accuracy in combining classifiers
100927 -- 0Yang Li 0089, Yizhong Wang, Cankun Wang, Anjun Ma, Qin Ma 0003, Bingqiang Liu. A weighted two-stage sequence alignment framework to identify motifs from ChIP-exo data
100929 -- 0Bo Qian, Hao Chen, Xiangning Wang, Zhouyu Guan, Tingyao Li, Yixiao Jin, Yilan Wu, Yang Wen, Haoxuan Che, Gitaek Kwon, Jaeyoung Kim, SungJin Choi, Seoyoung Shin, Felix Krause, Markus Unterdechler, Junlin Hou, Rui Feng, Yihao Li, Mostafa El Habib Daho, Dawei Yang, Bin Sheng 0001. DRAC 2022: A public benchmark for diabetic retinopathy analysis on ultra-wide optical coherence tomography angiography images
100932 -- 0Georgios Rizos, Jenna Lawson, Simon Mitchell, Pranay Shah, Xin Wen, Cristina Banks-Leite, Robert M. Ewers, Björn W. Schuller. Propagating variational model uncertainty for bioacoustic call label smoothing
100933 -- 0Jenna Kefeli, Nicholas P. Tatonetti. TCGA-Reports: A machine-readable pathology report resource for benchmarking text-based AI models
100934 -- 0Leticia Márquez-Magaña. Anti-deficit is anti-racist and transformative
100943 -- 0Valentin Liévin, Christoffer Egeberg Hother, Andreas Geert Motzfeldt, Ole Winther. Can large language models reason about medical questions?
100944 -- 0Brandon Theodorou, Lucas Glass, Cao Xiao, Jimeng Sun 0001. FRAMM: Fair ranking with missing modalities for clinical trial site selection
100945 -- 0Benjamin P. Danek, Mary B. Makarious, Anant Dadu, Dan Vitale, Paul Suhwan Lee, Andrew B. Singleton, Mike A. Nalls, Jimeng Sun 0001, Faraz Faghri. Federated learning for multi-omics: A performance evaluation in Parkinson's disease
100948 -- 0Yosra Magdi Mekki. Physicians should build their own machine-learning models
100952 -- 0Georgios Rizos, Jenna L. Lawson, Björn W. Schuller. Meet the authors: Georgios Rizos, Jenna L. Lawson, and Björn W. Schuller
100953 -- 0Alejandra Alvarado, Andrew L. Hufton. From scraped to published

Volume 5, Issue 2

100894 -- 0Li-Ju Wang, Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang, Yidong Chen, Yu-Chiao Chiu. shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning
100895 -- 0Jinge Wang, Runnan Cao, Puneeth N. Chakravarthula, Xin Li, Shuo Wang. A critical period for developing face recognition
100899 -- 0Hyeontae Jo, Hyukpyo Hong, Hyung Ju Hwang, Won Chang, Jae Kyoung Kim. Density physics-informed neural networks reveal sources of cell heterogeneity in signal transduction
100910 -- 0Michael R. Waters, Matthew Inkman, Kay Jayachandran, Roman M. Kowalchuk, Clifford Robinson, Julie K. Schwarz, S. Joshua Swamidass, Obi L. Griffith, Jeffrey J. Szymanski, Jin Zhang. GAiN: An integrative tool utilizing generative adversarial neural networks for augmented gene expression analysis
100911 -- 0Yi Liu, Yuelei Zhang, Xiao Chang, Xiaoping Liu. MDIC3: Matrix decomposition to infer cell-cell communication
100913 -- 0Suraj Rajendran, Weishen Pan, Mert R. Sabuncu, Yong Chen, Jiayu Zhou, Fei Wang 0001. Learning across diverse biomedical data modalities and cohorts: Challenges and opportunities for innovation
100917 -- 0Le Jiang, Liyan Ma, Tieyong Zeng, Shihui Ying. UFPS: A unified framework for partially annotated federated segmentation in heterogeneous data distribution
100926 -- 0Upol Ehsan, Mark O. Riedl. Social construction of XAI: Do we need one definition to rule them all?
100928 -- 0Bingjie Yan, Danmin Cao, Xinlong Jiang, Yiqiang Chen, Weiwei Dai, Fan Dong, Wuliang Huang, Teng Zhang, Chenlong Gao, Qian Chen, Zhen Yan, Zhirui Wang. FedEYE: A scalable and flexible end-to-end federated learning platform for ophthalmology
100931 -- 0David S. Goodsell, Shuchismita Dutta, Brian P. Hudson, Maria Voigt, Stephen K. Burley, Christine Zardecki. Folding paper models of biostructures for outreach and education

Volume 5, Issue 12

101081 -- 0Shuyu Liu, Jingjing Zhou, Xuequan Zhu, Ya Zhang, Xinzhu Zhou, Shaoting Zhang, Zhi Yang, Ziji Wang, Ruoxi Wang, Yizhe Yuan, Xin Fang, Xiongying Chen, Yanfeng Wang, Ling Zhang, Gang Wang, Cheng Jin. An objective quantitative diagnosis of depression using a local-to-global multimodal fusion graph neural network
101097 -- 0Yimu Pan, Manas Mehta, Jeffery A. Goldstein, Joseph Ngonzi, Lisa M. Bebell, Drucilla J. Roberts, Chrystalle Katte Carreon, Kelly Gallagher, Rachel E. Walker, Alison D. Gernand, James Ze Wang. Cross-modal contrastive learning for unified placenta analysis using photographs
101098 -- 0Chaochao Chen 0001, Xiaohua Feng, Yuyuan Li, Lingjuan Lyu, Jun Zhou 0011, Xiaolin Zheng, Jianwei Yin. Integration of large language models and federated learning
101099 -- 0Charles H. Martin, Ganesh Mani. The recent Physics and Chemistry Nobel Prizes, AI, and the convergence of knowledge fields
101114 -- 0Yingji Xia, Xiqun Michael Chen, Sudan Sun. Data-knowledge co-driven innovations in engineering and management
101115 -- 0Jake Crawford, Maria Chikina, Casey S. Greene. Best holdout assessment is sufficient for cancer transcriptomic model selection
101116 -- 0Christopher Wiedeman, Ge Wang. Decorrelative network architecture for robust electrocardiogram classification

Volume 5, Issue 11

101057 -- 0Cheng Tang, Yang Zhou, Shuaizhu Zhao, Mingshu Xie, Ruizhe Zhang, Xiaoyan Long, Lingqiang Zhu, Youming Lu, Guangzhi Ma, Hao Li. Segmentation tracking and clustering system enables accurate multi-animal tracking of social behaviors
101064 -- 0Patrick Kuckertz, Jan Göpfert, Oliver Karras, David Neuroth, Julian Schönau, Rodrigo Pueblas, Stephan Ferenz, Felix Engel 0003, Noah Pflugradt, Jann M. Weinand, Astrid Nieße, Sören Auer, Detlef Stolten. DataDesc: A framework for creating and sharing technical metadata for research software interfaces
101073 -- 0Chumphol Bunkhumpornpat, Ekkarat Boonchieng, Varin Chouvatut, David Lipsky. FLEX-SMOTE: Synthetic over-sampling technique that flexibly adjusts to different minority class distributions
101074 -- 0Hao Cui, Taha Yasseri. AI-enhanced collective intelligence
101077 -- 0Inken Hagestedt, Ian Hales, Eric Boernert, Holger R. Roth, Michael A. Hoeh, Robin Roehm, Ellie Dobson, José Tomás Prieto. Toward a tipping point in federated learning in healthcare and life sciences
101078 -- 0Arthur Gwagwa, Warmhold Jan Thomas Mollema. How could the United Nations Global Digital Compact prevent cultural imposition and hermeneutical injustice?
101079 -- 0Qiong Wu, Nathan M. Pajor, Yiwen Lu, Charles J. Wolock, Jiayi Tong, Vitaly Lorman, Kevin B. Johnson, Jason H. Moore, Christopher B. Forrest, David A. Asch, Yong Chen 0016. A latent transfer learning method for estimating hospital-specific post-acute healthcare demands following SARS-CoV-2 infection
101080 -- 0Angelina Wang, Aaron Hertzmann, Olga Russakovsky. Benchmark suites instead of leaderboards for evaluating AI fairness
101092 -- 0Kelly Widdicks, Faiza Samreen, Gordon S. Blair, Susannah Rennie, John Watkins. A multi-dimensional approach to the future of digital research infrastructure for systemic environmental science
101093 -- 0Hendrik A. de Weerd, Dimitri Guala, Mika Gustafsson, Jane Synnergren, Jesper Tegnér, Zelmina Lubovac-Pilav, Rasmus Magnusson. Latent space arithmetic on data embeddings from healthy multi-tissue human RNA-seq decodes disease modules
101094 -- 0James Z. Wang, Brad Wyble. Hopfield and Hinton's neural network revolution and the future of AI
101095 -- 0So Nakagawa, Shoichi Sakaguchi. Exploring the hidden world of RNA viruses with a transformer-based tool
101096 -- 0Hyunghoon Cho. Privacy of single-cell gene expression data

Volume 5, Issue 10

101042 -- 0A. N. M. Nafiz Abeer, Nathan M. Urban, M. Ryan Weil, Francis J. Alexander, Byung-Jun Yoon. Multi-objective latent space optimization of generative molecular design models
101045 -- 0Gale M. Lucas, Burcin Becerik-Gerber, Shawn C. Roll. Calibrating workers' trust in intelligent automated systems
101046 -- 0Michael A. Lones. Avoiding common machine learning pitfalls
101047 -- 0Julius Vetter, Jakob H. Macke, Richard Gao. Generating realistic neurophysiological time series with denoising diffusion probabilistic models
101048 -- 0Roberto De Filippo, Dietmar Schmitz. Transcriptomic mapping of the 5-HT receptor landscape
101049 -- 0Erik-Jan van Kesteren. To democratize research with sensitive data, we should make synthetic data more accessible
101058 -- 0J. Scott Christianson. End the AI detection arms race
101059 -- 0Mingxuan Liu, Yilin Ning, Yuhe Ke, Yuqing Shang, Bibhas Chakraborty, Marcus Eng Hock Ong, Roger Vaughan, Nan Liu 0003. FAIM: Fairness-aware interpretable modeling for trustworthy machine learning in healthcare
101060 -- 0Claudia Chu, Conor Messer, Samantha Van Seters, Mendy Miller, Kristy L. Schlueter-Kuck, Gad Getz. AnnoMate: Exploring and annotating integrated molecular data through custom interactive visualizations
101061 -- 0Andrew L. Hufton. Balancing innovation and integrity in peer review
101062 -- 0Brent A. Anders. Student skills need to evolve to match our new AI society
101063 -- 0Euijeong Song, Minsuh Kim, Siyoung Lee, Hui-wen Liu, Jihyun Kim, Dong-Hee Choi, Roger Kamm, Seok Chung, Ji Hun Yang, Tae Hwan Kwak. VONet: A deep learning network for 3D reconstruction of organoid structures with a minimal number of confocal images
101072 -- 0Giacomo B. Marino, Daniel J. B. Clarke, Alexander Lachmann, Eden Z. Deng, Avi Ma'ayan. RummaGEO: Automatic mining of human and mouse gene sets from GEO
101075 -- 0Yinqi Bai, Clayton W. Kosonocky, James Z. Wang. How our authors are using AI tools in manuscript writing
101076 -- 0Andrew L. Hufton, Alejandra Alvarado. Type less, think more

Volume 5, Issue 1

100887 -- 0Jingye Yang, Cong Liu 0020, Wendy Deng, Da Wu, Chunhua Weng, Yunyun Zhou, Kai Wang 0049. Enhancing phenotype recognition in clinical notes using large language models: PhenoBCBERT and PhenoGPT
100893 -- 0Vasileios C. Pezoulas, Fanis G. Kalatzis, Themis P. Exarchos, Andreas Goules, Athanasios G. Tzioufas, Dimitrios I. Fotiadis. FHBF: Federated hybrid boosted forests with dropout rates for supervised learning tasks across highly imbalanced clinical datasets
100896 -- 0Feng Xiong, Peng Xie, Zuohan Zhao, Yiwei Li, Sujun Zhao, Linus Manubens-Gil, Lijuan Liu, Hanchuan Peng. DSM: Deep sequential model for complete neuronal morphology representation and feature extraction
100897 -- 0Ahmad Nasimian, Saleena Younus, Özge Tatli, Emma U. Hammarlund, Kenneth J. Pienta, Lars Rönnstrand, Julhash U. Kazi. AlphaML: A clear, legible, explainable, transparent, and elucidative binary classification platform for tabular data
100898 -- 0Weishen Pan, Zhenxing Xu, Suraj Rajendran, Fei Wang 0001. An adaptive federated learning framework for clinical risk prediction with electronic health records from multiple hospitals
100906 -- 0Jun Wen, Jue Hou, Clara-Lea Bonzel, Yihan Zhao, Victor M. Castro, Vivian S. Gainer, Dana Weisenfeld, Tianrun Cai, Yuk-Lam Ho, Vidul Ayakulangara Panickan, Lauren Costa, Chuan Hong, J. Michael Gaziano, Katherine P. Liao, Junwei Lu, Kelly Cho, Tianxi Cai. LATTE: Label-efficient incident phenotyping from longitudinal electronic health records
100907 -- 0Fengda Zhang, Zitao Shuai, Kun Kuang, Fei Wu, Yueting Zhuang, Jun Xiao. Unified fair federated learning for digital healthcare
100909 -- 0Arash Keshavarzi Arshadi, Milad Salem, Heather Karner, Kristle Garcia, Abolfazl Arab, Jiann-shiun Yuan, Hani Goodarzi. Functional microRNA-targeting drug discovery by graph-based deep learning
100912 -- 0Hanchuan Peng, Peng Xie, Feng Xiong. Meet the authors: Hanchuan Peng, Peng Xie, and Feng Xiong
100914 -- 0Roel Roscam Abbing, Robert W. Gehl. Shifting your research from X to Mastodon? Here's what you need to know
100916 -- 0Andrew L. Hufton. Looking forward to the new year