Edward C. Uberbacher - researchr alias

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Viewing Publication 1 - 29 from 29

2016

2012

2010

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regionsTatiana V. Karpinets, Margaret F. Romine, Denise Schmoyer, Guruprasad Kora, Mustafa H. Syed, Michael R. Leuze, Margrethe H. Serres, Byung-Hoon Park, Nagiza F. Samatova, Edward C. Uberbacher. biodb, 2010, 2010. [doi]

2003

2000

Sequence-structure specificity of a knowledge based energy function at the secondary structure levelDong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher. bioinformatics, 16(3):269-285, 2000.

1998

A segmentation algorithm for noisy images: Design and evaluationYing Xu, Victor Olman, Edward C. Uberbacher. prl, 19(13):1213-1224, 1998. [doi]

A new method for modeling and solving the protein fold recognition problem (extended abstract)Ying Xu, Dong Xu, Edward C. Uberbacher. recomb 1998: 285-292 [doi]

An Efficient Computational Method for Globally Optimal ThreadingYing Xu, Dong Xu, Edward C. Uberbacher. jcb, 5(3):597, 1998.

1997

Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence TagsYing Xu, Richard J. Mural, Edward C. Uberbacher. ismb 1997: 344-353

Reference-based gene model prediction on DNA contigs (extended abstract)Ying Xu, Edward C. Uberbacher. recomb 1997: 330-336 [doi]

2D image segmentation using minimum spanning treesYing Xu, Edward C. Uberbacher. ivc, 15(1):47-57, 1997. [doi]

Automated Gene Identification in Large-Scale Genomic SequencesYing Xu, Edward C. Uberbacher. jcb, 4(3):325-338, 1997.

1996

GRAIL: a multi-agent neural network system for gene identificationYing Xu 0001, Richard J. Mural, J. Ralph Einstein, Manesh B. Shah, Edward C. Uberbacher. pieee, 84(10):1544-1552, 1996. [doi]

Alignments of DNA and protein sequences containing frameshift errorsXiaojun Guan, Edward C. Uberbacher. bioinformatics, 12(1):31-40, 1996.

Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA SequenceSherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher. CANDC, 20(1):135-140, 1996. [doi]

Gene Prediction by Pattern Recognition and Homology SearchYing Xu, Edward C. Uberbacher. ismb 1996: 241-251

A polynomial-time algorithm for a class of protein threading problemsYing Xu, Edward C. Uberbacher. bioinformatics, 12(6):511-517, 1996.

An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding RegionsYing Xu, Richard J. Mural, Edward C. Uberbacher. jcb, 3(3):333-344, 1996.

1995

1994

An Improved System for Exon Recognition and Gene Modeling in Human DNA SequenceYin Xu, J. Ralph Einstein, Richard J. Mural, Manesh J. Shah, Edward C. Uberbacher. ismb 1994: 376

Constructing gene models from accurately predicted exons: an application of dynamic programmingYing Xu, Richard J. Mural, Edward C. Uberbacher. bioinformatics, 10(6):613-623, 1994.

1991

On Parallel Search of DNA Sequence DatabasesXiaojun Guan, Richard J. Mural, Reinhold Mann, Edward C. Uberbacher. ppsc 1992: 332-337

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