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Viewing Publication 1 - 40 from 40

2020

CaverDock: A Novel Method for the Fast Analysis of Ligand TransportJiri Filipovic, Ondrej Vávra, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Ludek Matyska, Jirí Damborský. tcbb, 17(5):1625-1638, 2020. [doi]

2019

CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channelsOndrej Vavra, Jiri Filipovic, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Jan Stourac, Ludek Matyska, Jirí Damborský. bioinformatics, 35(23):4986-4993, 2019. [doi]

2018

Common ELIXIR Service for Researcher Authentication and AuthorisationMikael Linden, Michal Procházka, Ilkka Lappalainen, Dominik Bucik, Pavel Vyskocil, Martin Kuba, Sami Silén, Peter Belmann, Alexander Sczyrba, Steven Newhouse, Ludek Matyska, Tommi H. Nyrönen. f1000research, 7:1199, 2018. [doi]

INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-Infrastructures Davide Salomoni, Isabel Campos Plasencia, Luciano Gaido, Jesús E. Marco De Lucas, P. Solagna, J. Gomes, Ludek Matyska, P. Fuhrman, Marcus Hardt, Giacinto Donvito, L. Dutka, Marcin Plóciennik, Roberto Barbera, Ignacio Blanquer, Andrea Ceccanti, E. Cetinic, Mário David, C. Duma, Álvaro López García, Germán Moltó, Pablo Orviz Fernández, Zdenek Sustr, M. Viljoen, Fernando Aguilar, Luís Alves, M. Antonacci, Lucio Angelo Antonelli, Stefano Bagnasco, A. Bonving, Riccardo Bruno, Y. Chen, A. Costa, Davor Davidovic, Benjamin Ertl, Marco Fargetta, Sandro Fiore, S. Gallozzi, Z. Kurkcuoglu, L. Lloret, J. Martins, Alessandra Nuzzo, Paola Nassisi, Cosimo Palazzo, João Murta Pina, Eva Sciacca, Daniele Spiga, M. Tangaro, Michal Urbaniak, Sara Vallero, Bas Wegh, Valentina Zaccolo, F. Zambelli, Tomasz Zok. grid, 16(3):381-408, 2018. [doi]

2015

Optimizing CUDA code by kernel fusion: application on BLASJiri Filipovic, Matus Madzin, Jan Fousek, Ludek Matyska. tjs, 71(10):3934-3957, 2015. [doi]

The Czech e-Infrastructure and the European Grid Infrastructure PerspectiveLudek Matyska. isess 2015: 561-568 [doi]

2014

On proper simulation of phenomena influencing image formation in fluorescence microscopyDavid Svoboda, Vladimír Ulman, Ludek Matyska, Martin Maska, Jan Bella, Stanislav Stejskal. icip 2014: 3944-3948 [doi]

2010

Real-time visio-haptic interaction with static soft tissue models having geometric and material nonlinearityIgor PeterlÃk, Mert Sedef, Cagatay Basdogan, Ludek Matyska. cg, 34(1):43-54, 2010. [doi]

User centric authentication for web applicationsMichal Procházka, Daniel Kouril, Ludek Matyska. cts 2010: 67-74 [doi]

2009

2008

2007

Nonblocking Distributed Replication of Versioned FilesLukás Hejtmánek, Ludek Matyska. jsw, 2(5):16-23, 2007. [doi]

Transparent security for collaborative environmentsEva Hladká, Daniel Kouril, Michal Procházka, Ludek Matyska, Petr Holub. colcom 2007: 79-84 [doi]

Alea - Grid Scheduling Simulation EnvironmentDalibor Klusácek, Ludek Matyska, Hana Rudová. ppam 2008: 1029-1038 [doi]

A Robust and Efficient Mechanism to Distribute Certificate Revocation Information Using the Grid Monitoring ArchitectureDaniel Kouril, Ludek Matyska, Michal Procházka. aina 2007: 614-619 [doi]

An Algorithm of State-Space Precomputation Allowing Non-linear Haptic Deformation Modelling Using Finite Element MethodIgor Peterlík, Ludek Matyska. haptics 2007: 231-236 [doi]

Scheduling virtual grids: the Magrathea systemMiroslav Ruda, Jirí Denemark, Ludek Matyska. sc 2007: [doi]

2006

gLite Job ProvenanceFrantisek Dvorák, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jan Pospísil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, Michal Vocu. ipaw 2006: 246-253 [doi]

High-definition multimedia for multiparty low-latency interactive communicationPetr Holub, Ludek Matyska, Milos Liska, Lukás Hejtmánek, Jirí Denemark, Tomás Rebok, Andrei Hutanu, Ravi Paruchuri, Jan Radil, Eva Hladká. fgcs, 22(8):856-861, 2006. [doi]

Distributed and collaborative visualization of large data sets using high-speed networksAndrei Hutanu, Gabrielle Allen, Stephen David Beck, Petr Holub, Hartmut Kaiser, Archit Kulshrestha, Milos Liska, Jon MacLaren, Ludek Matyska, Ravi Paruchuri, Steffen Prohaska, Edward Seidel, Brygg Ullmer, Shalini Venkataraman. fgcs, 22(8):1004-1010, 2006. [doi]

Virtual Environments - Framework for Virtualized Resource Access in the GridMichal Jankowski, Pawel Wolniewicz, Jirí Denemark, Norbert Meyer, Ludek Matyska. europar 2007: 101-111 [doi]

Improving Security in Grids Using the Smart Card TechnologyDaniel Kouril, Ludek Matyska, Michal Procházka. ccgrid 2006: 303-304 [doi]

2005

Best Practices of User Account Management with Virtual Organization Based Access to GridJirí Denemark, Michal Jankowski, Ales Krenek, Ludek Matyska, Norbert Meyer, Miroslav Ruda, Pawel Wolniewicz. ppam 2006: 633-642 [doi]

Scalability and Robustness of Virtual Multicast for Synchronous Multimedia DistributionPetr Holub, Eva Hladká, Ludek Matyska. icn 2005: 876-883 [doi]

2004

2003

Building 3D State Spaces of Virtual Environments with a TDS-Based AlgorithmAles Krenek, Igor Peterlík, Ludek Matyska. pvm 2003: 529-536 [doi]

2001

1996

High Performance Computing - The Computational Chemistry PerspectiveLudek Matyska. sofsem 1996: 197-216

1995

Constraint Logic Programming with Fuzzy SetsLudek Matyska, Hynek Bures. sofsem 1995: 413-418

1994

D-CICADA : A Software for Confromational PES Elucidation on Network of WorkstationsLudek Matyska, Jaroslav Koca. jcc, 15(9):937-946, 1994.

1991

MAPOS: a computer program for organic synthesis design based on synthon model of organic chemistryLudek Matyska, Jaroslav Koca. jcisd, 31(3):380-386, 1991. [doi]

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