Sun Kim - researchr alias

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2011

Göllnitz-Gordon identities and parity questionsSun Kim, Ae Ja Yee. ejc, 32(2):288-293, 2011. [doi]

2010

2009

Evolving hypernetwork models of binary time series for forecasting price movements on stock marketsElena Bautu, Sun Kim, Andrei Bautu, Henri Luchian, Byoung-Tak Zhang. cec 2009: 166-173 [doi]

Evolutionary hypernetwork classifiers for protein-proteininteraction sentence filteringJakramate Bootkrajang, Sun Kim, Byoung-Tak Zhang. gecco 2009: 185-192 [doi]

Bijective proofs of partition identities arising from modular equationsSun Kim. JCT, 116(3):699-712, 2009. [doi]

MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expressionSeungyoon Nam, Meng Li, Kwangmin Choi, Curtis Balch, Sun Kim, Kenneth P. Nephew. nar, 37(Web-Server-Issue):356-362, 2009. [doi]

Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistanceFuxiao Xin, Meng Li, Curtis Balch, Michael Thomson, Meiyun Fan, Yunlong Liu, Scott M. Hammond, Sun Kim, Kenneth P. Nephew. bioinformatics, 25(4):430-434, 2009. [doi]

Experience report: issues in comparing gene function annotation in textYoungik Yang, Sun Kim. sigdoc 2009: 227-232 [doi]

2008

2008 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008, 3-5 November 2008, Philadephia, Pennsylvania, USAXue-wen Chen, Xiaohua Hu, Sun Kim, editors, IEEE Computer Society, 2008.

ComPath: comparative enzyme analysis and annotation in pathway/subsystem contextsKwangmin Choi, Sun Kim. bmcbi, 9, 2008. [doi]

A machine-learning approach to combined evidence validation of genome assembliesJeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G. Gilbert, John Colbourne. bioinformatics, 24(6):744-750, 2008. [doi]

A gene pattern mining algorithm using interchangeable gene sets for prokaryotesMeng Hu, Kwangmin Choi, Wei Su, Sun Kim, Jiong Yang. bmcbi, 9, 2008. [doi]

Predicting DNA Methylation Susceptibility Using CpG Flanking SequencesSun Kim, Meng Li, Hyun-il Henry Paik, Kenneth P. Nephew, Huidong Shi, Robin Kramer, Dong Xu, T.-H. Huang. psb 2008: 315-326 [doi]

PIE: an online prediction system for protein-protein interactions from textSun Kim, Soo-Yong Shin, In-Hee Lee, Soo-Jin Kim, Ram Sriram, Byoung-Tak Zhang. nar, 36(Web-Server-Issue):411-415, 2008. [doi]

Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cellsMeng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim. bioinformatics, 24(16):1745-1748, 2008. [doi]

BioVLAB-Microarray: Microarray Data Analysis in Virtual EnvironmentYoungik Yang, Jong Youl Choi, Kwangmin Choi, Marlon E. Pierce, Dennis Gannon, Sun Kim. eScience 2008: 159-165 [doi]

2007

dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysisSeung-Hee Bae, Haixu Tang, Jing Wu, Jun Xie, Sun Kim. bioinformatics, 23(19):2619-2621, 2007. [doi]

CLASSEQ: Classification of Sequences via Comparative Analysis of Multiple GenomesKwangmin Choi, Youngik Yang, Sun Kim. icmla 2008: 554-559 [doi]

A Study of Residue Correlation within Protein Sequences and Its Application to Sequence ClassificationChristopher Michael Hemmerich, Sun Kim. ejbsb, 2007, 2007. [doi]

EGGS: Extraction of Gene Clusters Using Genome Context Based Sequence Matching TechniquesSun Kim, Ankita Bhan, Bharath K. Maryada, Kwangmin Choi, Yves V. Brun. bibm 2007: 23-28 [doi]

Evolving hypernetwork classifiers for microRNA expression profile analysisSun Kim, Soo-Jin Kim, Byoung-Tak Zhang. cec 2007: 313-319 [doi]

Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary AlgorithmChan-Hoon Park, Soo-Jin Kim, Sun Kim, Dong-Yeon Cho, Byoung-Tak Zhang. bibe 2007: 158-163 [doi]

Bioinformatics: Mining the Massive Data from High Throughput Genomics ExperimentsHaixu Tang, Sun Kim. In Sanghamitra Bandyopadhyay, Ujjwal Maulik, Jason Tsong-Li Wang, editors, Analysis of Biological Data: A Soft Computing Approach. pages 3-24, World Scientific, 2007.

2006

Advanced Signal Processing Techniques for BioinformaticsXue-wen Chen, Sun Kim, Vladimir I. Pavlovic, David Casasent. ejasp, 2006, 2006. [doi]

Genome Data Type: a Vehicle to Deliver a Genome Comparison System on the WebKwangmin Choi, Amit Saple, Sun Kim. icdm 2006: 142-146 [doi]

Data Mining and Bioinformatics, First International Workshop, VDMB 2006, Seoul, Korea, September 11, 2006, Revised Selected PapersMehmet M. Dalkilic, Sun Kim, Jiong Yang, editors, Volume 4316 of Lecture Notes in Computer Science, Springer, 2006.

A Tree Kernel-Based Method for Protein-Protein Interaction Mining from Biomedical LiteratureJae-Hong Eom, Sun Kim, Seong-Hwan Kim, Byoung-Tak Zhang. pakdd 2006: 42-52 [doi]

Prediction of the Human Papillomavirus Risk Types Using Gap-Spectrum KernelsSun Kim, Jae-Hong Eom. isnn 2006: 710-715 [doi]

Human Papillomavirus Risk Type Classification from Protein Sequences Using Support Vector MachinesSun Kim, Byoung-Tak Zhang. evoW 2006: 57-66 [doi]

BAG: a graph theoretic sequence clustering algorithmSun Kim, Jason Lee. ijdmb, 1(2):178-200, 2006. [doi]

COMPAM : visualization of combining pairwise alignments for multiple genomesDo-Hoon Lee, Jeong-Hyeon Choi, Mehmet M. Dalkilic, Sun Kim. bioinformatics, 22(2):242-244, 2006. [doi]

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alphaLang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew. bioinformatics, 22(18):2210-2216, 2006. [doi]

An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein SequencesRupali Patwardhan, Haixu Tang, Sun Kim, Mehmet M. Dalkilic. vdmb 2006: 158-169 [doi]

ARCS: an aggregated related column scoring scheme for aligned sequencesBin Song, Jeong-Hyeon Choi, Guangyu Chen, Jacek Szymanski, Guo-Qiang Zhang, Anthony K. H. Tung, Jaewoo Kang, Sun Kim, Jiong Yang. bioinformatics, 22(19):2326-2332, 2006. [doi]

REFINEMENT: A search framework for the identification of interferon-responsive elements in DNA sequences - a case study with ISRE and GASTakuma Tsukahara, Sun Kim, Milton W. Taylor. CANDC, 30(2):134-147, 2006. [doi]

2005

PLATCOM: a Platform for Computational Comparative GenomicsKwangmin Choi, Yu Ma, Jeong-Hyeon Choi, Sun Kim. bioinformatics, 21(10):2514-2516, 2005. [doi]

PLATCOM: a Platform for Computational Comparative Genomics on the WebKwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhiping Wang, Jason Lee, Sun Kim. csb 2005: 27-30 [doi]

PLATCOM: Current Status and Plan for the Next StagesKwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhiping Wang, Jason Lee, Sun Kim. dils 2005: 300-304 [doi]

GAME: A simple and efficient whole genome alignment method using maximal exact match filteringJeong-Hyeon Choi, Hwan-Gue Cho, Sun Kim. CANDC, 29(3):244-253, 2005. [doi]

Gene Teams with Relaxed Proximity ConstraintSun Kim, Jeong-Hyeon Choi, Jiong Yang. csb 2005: 44-55 [doi]

An Application of Support Vector Machines for Customer Churn Analysis: Credit Card CaseSun Kim, Kyung-shik Shin, Kyungdo Park. icnc 2005: 636-647 [doi]

Cluster Utility: A New Metric for Clustering Biological SequencesJason Lee, Sun Kim. csb 2005: 45-46 [doi]

2004

Multiple Genome Alignment by Clustering Pairwise MatchesJeong-Hyeon Choi, Kwangmin Choi, Hwan-Gue Cho, Sun Kim. recomb 2005: 30-41 [doi]

Multi-objective Evolutionary Probe Design Based on Thermodynamic Criteria for HPV DetectionIn-Hee Lee, Sun Kim, Byoung-Tak Zhang. pricai 2004: 742-750 [doi]

Guiding motif discovery by iterative pattern refinementZhiping Wang, Mehmet M. Dalkilic, Sun Kim. SAC 2004: 162-166 [doi]

2003

Motif Discovery from Large Number of Sequences: A Case Study with Disease Resistance Genes in Arabidopsos thalianaIrfan Gunduz, Sihui Zhao, Mehmet M. Dalkilic, Sun Kim. metmbs 2003: 29-34

Genetic Mining of HTML Structures for Effective Web-Document RetrievalSun Kim, Byoung-Tak Zhang. apin, 18(3):243-256, 2003.

Graph Theoretic Sequence Clustering Algorithms and Their Applications to Genome ComparisonSun Kim. In Computational Biology and Genome Informatics. pages 81-116, 2003.

2001

A probabilistic approach to sequence assembly validationSun Kim, Li Liao, Jean-Francois Tomb. kdd 2001: 38-43 [doi]

2000

Web-Document Retrieval by Genetic Learning of Importance Factors for HTML TagsSun Kim, Byoung-Tak Zhang. pricai 2000: 13-23 [doi]

1999

A New String-Pattern Matching Algorithm Using Partitioning and Hashing EfficientlySun Kim. jea, 4:2, 1999. [doi]

SCAI TREC-8 ExperimentsDong-Ho Shin, Yu-Hwan Kim, Sun Kim, Jae-Hong Eom, Hyung-Joo Shin, Byoung-Tak Zhang. trec 1999: [doi]

1994

ModGen: Theorem Proving by Model GenerationSun Kim, Hantao Zhang. AAAI 1994: 162-167