Michael S. Waterman - researchr alias

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2010

An integrative modular approach to systematically predict gene-phenotype associationsMichael R. Mehan, Juan Nunez-Iglesias, Chao Dai, Michael S. Waterman, Xianghong Jasmine Zhou. bmcbi, 11(S-1):62, 2010. [doi]

2009

HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenomeJong-Hyun Kim, Woo-Cheol Kim, Michael S. Waterman, Sanghyun Park, Lei M. Li. bioinformatics, 25(18):2430-2431, 2009. [doi]

New Generations: Sequencing Machines and Their Computational ChallengesDavid C. Schwartz, Michael S. Waterman. jcst, 25(1):3-9, 2009. [doi]

The Seventh Asia Pacific Bioinformatics Conference (APBC2009)Michael Q. Zhang, Michael S. Waterman, Xuegong Zhang. bmcbi, 10(S-1), 2009. [doi]

2008

An Integrative Network Approach to Map the Transcriptome to the PhenomeMichael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou. recomb 2008: 232-245 [doi]

2007

Systematic discovery of functional modules and context-specific functional annotation of human genomeYu Huang 0003, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou. ismb 2007: 222-229 [doi]

Accuracy Assessment of Diploid Consensus SequencesJong-Hyun Kim, Michael S. Waterman, Lei M. Li. tcbb, 4(1):88-97, 2007. [doi]

A Quantile Method for Sizing Optical MapsHaifeng Li, Anton Valouev, David C. Schwartz, Michael S. Waterman, Lei M. Li. jcb, 14(3):255-266, 2007. [doi]

Gene Aging Nexus: a web database and data mining platform for microarray data on agingFei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, Xianghong Jasmine Zhou. nar, 35(Database-Issue):756-759, 2007. [doi]

On the Length of the Longest Exact Position Match in a Random SequenceGesine Reinert, Michael S. Waterman. tcbb, 4(1):153-156, 2007. [doi]

A graph-based approach to systematically reconstruct human transcriptional regulatory modulesXifeng Yan, Michael R. Mehan, Yu Huang 0003, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou. ismb 2007: 577-586 [doi]

2006

Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, ProceedingsAlberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, editors, Volume 3909 of Lecture Notes in Computer Science, Springer, 2006.

Integrative missing value estimation for microarray dataJianjun Hu, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou. bmcbi, 7:449, 2006. [doi]

Alignment of Optical MapsAnton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman. jcb, 13(2):442-462, 2006. [doi]

Refinement of optical map assembliesAnton Valouev, Yu Zhang, David C. Schwartz, Michael S. Waterman. bioinformatics, 22(10):1217-1224, 2006. [doi]

Whole Genome Optical MappingMichael S. Waterman. apbc 2006: 5 [doi]

Stan Ulam and Computational BiologyMichael S. Waterman. recomb 2006: 159-159 [doi]

2005

Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, ProceedingsSatoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, editors, Volume 3500 of Lecture Notes in Computer Science, Springer, 2005.

Alignment of Optical MapsAnton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman. recomb 2005: 489-504 [doi]

HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithmsKui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun. bioinformatics, 21(1):131-134, 2005. [doi]

2004

Computational Methods for SNPs and Haplotype Inference, DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised PapersSorin Istrail, Michael S. Waterman, Andrew G. Clark, editors, Volume 2983 of Lecture Notes in Computer Science, Springer, 2004.

Haplotype Reconstruction from SNP AlignmentLei M. Li, Jong-Hyun Kim, Michael S. Waterman. jcb, 11(2/3):505-516, 2004. [doi]

2003

2002

Zinc Finger Gene Clusters and Tandem Gene DuplicationMengxiang Tang, Michael S. Waterman, Shibu Yooseph. jcb, 9(2):429-446, 2002.

Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype DataKui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun. recomb 2004: 96-112 [doi]

2001

A new approach to fragment assembly in DNA sequencingPavel A. Pevzner, Haixu Tang, Michael S. Waterman. recomb 2001: 256-267 [doi]

Zinc finger gene clusters and tandem gene duplicationMengxiang Tang, Michael S. Waterman, Shibu Yooseph. recomb 2001: 297-304 [doi]

2000

Probabilistic and Statistical Properties of Words: An OverviewGesine Reinert, Sophie Schbath, Michael S. Waterman. jcb, 7(1-2):1-46, 2000.

1998

Estimation for Restriction Sites Observed by Optical Mapping Using Reversible-Jump Markov Chain Monte CarloJae Kyu Lee, Vlado Dancík, Michael S. Waterman. jcb, 5(3):505-516, 1998.

Estimation for restriction sites observed by optical mapping using reversible-jump Markov chain Monte CarloJae Kyu Lee, Vlado Dancík, Michael S. Waterman. recomb 1998: 147-152 [doi]

1997

1996

Poisson Process Approximation for Sequence Repeats and Sequencing by HybridizationRichard Arratia, D. Martin, Gesine Reinert, Michael S. Waterman. jcb, 3(3):425, 1996.

Alignment Networks and Electrical NetworksMartin Vingron, Michael S. Waterman. DAM, 71(1-3):297-309, 1996. [doi]

1995

A New Algorithm for DNA Sequence AssemblyRamana M. Idury, Michael S. Waterman. jcb, 2(2):291-306, 1995.

Multiple Filtration and Approximate Pattern MatchingPavel A. Pevzner, Michael S. Waterman. algorithmica, 13(1/2):135-154, 1995.

Open Combinatorial Problems in Computational Molecular BiologyPavel A. Pevzner, Michael S. Waterman. istcs 1995: 158-173

Introduction to computational biology - maps, sequences, and genomes: interdisciplinary statisticsMichael S. Waterman. CRC Press, 1995.

1994

Linear Trees and RNA Secondary StructureWilliam R. Schmitt, Michael S. Waterman. DAM, 51(3):317-323, 1994. [doi]

1993

A Fast Filtration Algorithm for the Substring Matching ProblemPavel A. Pevzner, Michael S. Waterman. cpm 1993: 197-214

Sequence Comparison and Statistical Significance in Molecular Biology (Abstract)Michael S. Waterman. esa 1993: 396

1992

Dynamic programming algorithms for restriction map comparisonX. Huang, Michael S. Waterman. bioinformatics, 8(5):511-520, 1992.

Matrix Longest Common Subsequence Problem, Duality and Hibert BasesPavel A. Pevzner, Michael S. Waterman. cpm 1992: 79-89

1991

A systolic array processor for biological information signal processingE. T. Chow, J. C. Peterson, Michael S. Waterman, Tim Hunkapiller, B. A. Zimmermann. ics 1991: 216-223 [doi]

1984

On the statistical significance of nucleic acid similaritiesDavid J. Lipman, W. John Wilbur, Temple F. Smith, Michael S. Waterman. nar, 12(1):215-226, 1984.

Algorithms for restriction map comparisonsMichael S. Waterman, Temple F. Smith, H. L. Katcher. nar, 12(1):237-242, 1984.