| 1011145 | -- | 0 | Yifei Ren, Pouya Bashivan. How well do models of visual cortex generalize to out of distribution samples? |
| 1011200 | -- | 0 | Velma K. Lopez, Estee Y. Cramer, Robert Pagano, John M. Drake, Eamon B. O'Dea, Madeline Adee, Turgay Ayer, Jagpreet Chhatwal, Ozden O. Dalgic, Mary A. Ladd, Benjamin P. Linas, Peter P. Mueller, Jade Xiao, Johannes Bracher, Alvaro J. Castro Rivadeneira, Aaron Gerding, Tilmann Gneiting, Yuxin Huang, Dasuni Jayawardena, Abdul H. Kanji, Khoa Le, Anja Mühlemann, Jarad Niemi, Evan L. Ray, Ariane Stark, Yijin Wang, Nutcha Wattanachit, Martha W. Zorn, Sen Pei, Jeffrey Shaman, Teresa K. Yamana, Samuel R. Tarasewicz, Daniel J. Wilson, Sid Baccam, Heidi Gurung, Steve Stage, Brad Suchoski, Lei Gao, Zhiling Gu, Myungjin Kim, Xinyi Li, Guannan Wang, Lily Wang, Yueying Wang, Shan Yu, Lauren Gardner, Sonia Jindal, Maximilian Marshall, Kristen Nixon, Juan Dent, Alison L. Hill, Joshua Kaminsky, Elizabeth C. Lee, Joseph Chadi Lemaitre, Justin Lessler, Claire P. Smith, Shaun Truelove, Matt Kinsey, Luke C. Mullany, Kaitlin Rainwater-Lovett, Lauren Shin, Katharine Tallaksen, Shelby Wilson, Dean Karlen, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dave Osthus, Jiang Bian 0002, Wei Cao, Zhifeng Gao, Juan Lavista Ferres, Chaozhuo Li 0001, Tie-Yan Liu, Xing Xie 0001, Shun Zhang, Shun Zheng, Matteo Chinazzi, Jessica T. Davis, Kunpeng Mu, Ana L. Pastore y Piontti, Alessandro Vespignani, Xinyue Xiong, Robert Walraven, Jinghui Chen, Quanquan Gu, Lingxiao Wang, Pan Xu 0002, Weitong Zhang, Difan Zou, Graham Casey Gibson, Daniel Sheldon, Ajitesh Srivastava, Aniruddha Adiga, Benjamin Hurt, Gursharn Kaur, Bryan Lewis 0001, Madhav V. Marathe, Akhil Sai Peddireddy, Przemyslaw J. Porebski, Srinivasan Venkatramanan, Lijing Wang 0001, Pragati V. Prasad, Jo W. Walker, Alexander E. Webber, Rachel B. Slayton, Matthew Biggerstaff, Nicholas G. Reich, Michael A. Johansson. Challenges of COVID-19 Case Forecasting in the US, 2020-2021 |
| 1011350 | -- | 0 | Paulina Clara Dagnino, Anira Escrichs, Ane López-González, Olivia Gosseries, Jitka Annen, Yonatan Sanz Perl, Morten L. Kringelbach, Steven Laureys, Gustavo Deco. Re-awakening the brain: Forcing transitions in disorders of consciousness by external in silico perturbation |
| 1011372 | -- | 0 | Sean M. Cascarina, Eric D. Ross. Identification of Low-Complexity Domains by Compositional Signatures Reveals Class-Specific Frequencies and Functions Across the Domains of Life |
| 1011408 | -- | 0 | Sanjeevani Choudhery, Michael A. DeJesus, Aarthi Srinivasan, Jeremy Rock, Dirk Schnappinger, Thomas R. Ioerger. A dose-response model for statistical analysis of chemical genetic interactions in CRISPRi screens |
| 1011416 | -- | 0 | Ariana Chriss, G. Valentin Börner, Shawn D. Ryan. Agent-based modeling of nuclear chromosome ensembles identifies determinants of homolog pairing during meiosis |
| 1011456 | -- | 0 | Eric R. Snyder, Alba Solsona-Berga, Simone Baumann-Pickering, Kait E. Frasier, Sean M. Wiggins, John A. Hildebrand. Where's Whaledo: A software toolkit for array localization of animal vocalizations |
| 1011543 | -- | 0 | Evan D. Gorman, Manuel E. Lladser. Interpretable metric learning in comparative metagenomics: The adaptive Haar-like distance |
| 1011605 | -- | 0 | Shoutik Mukherjee, Behtash Babadi. Adaptive modeling and inference of higher-order coordination in neuronal assemblies: A dynamic greedy estimation approach |
| 1011787 | -- | 0 | Luke Trinity, Ulrike Stege, Hosna Jabbari. Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot |
| 1011869 | -- | 0 | Moo K. Chung, Shih-Gu Huang, Ian C. Carroll, Vince D. Calhoun, H. Hill Goldsmith. Topological state-space estimation of functional human brain networks |
| 1011973 | -- | 0 | David Pastor-Alonso, Maxime Berg, Franck Boyer, Natalie Fomin-Thunemann, Michel Quintard, Yohan Davit, Sylvie Lorthois. Modeling oxygen transport in the brain: An efficient coarse-grid approach to capture perivascular gradients in the parenchyma |
| 1011999 | -- | 0 | Keiji Ota, Laurence T. Maloney. Dissecting Bayes: Using influence measures to test normative use of probability density information derived from a sample |
| 1012014 | -- | 0 | Andriana Manousidaki, Anna Little, Yuying Xie 0001. Clustering and visualization of single-cell RNA-seq data using path metrics |
| 1012018 | -- | 0 | Ava M. Hoffman, Carrie Wright. Ten simple rules for teaching an introduction to R |
| 1012024 | -- | 0 | Hong Yang, Ying Shi, Anqi Lin, Chang Qi, Zaoqu Liu, Quan Cheng, Kai Miao, Jian Zhang, Peng Luo. PESSA: A web tool for pathway enrichment score-based survival analysis in cancer |
| 1012043 | -- | 0 | Fleur Zeldenrust, Niccolò Calcini, Xuan Yan, Ate Bijlsma, Tansu Celikel. The tuning of tuning: How adaptation influences single cell information transfer |
| 1012045 | -- | 0 | Raphael Sonabend, Hugo Gruson, Leo Wolansky, Agnes Kiragga, Daniel S. Katz. FAIR-USE4OS: Guidelines for creating impactful open-source software |
| 1012046 | -- | 0 | Héctor M. Sánchez C., David L. Smith, John M. Marshall. MGSurvE: A framework to optimize trap placement for genetic surveillance of mosquito populations |
| 1012049 | -- | 0 | Blox Bloxham, Hyunseok Lee, Jeff Gore. Biodiversity is enhanced by sequential resource utilization and environmental fluctuations via emergent temporal niches |
| 1012052 | -- | 0 | Yves Dumont, Clélia F. Oliva. On the impact of re-mating and residual fertility on the Sterile Insect Technique efficacy: Case study with the medfly, Ceratitis capitata |
| 1012053 | -- | 0 | Benjamin Antin, Masato Sadahiro, Marta Gajowa, Marcus A. Triplett, Hillel Adesnik, Liam Paninski. Removing direct photocurrent artifacts in optogenetic connectivity mapping data via constrained matrix factorization |
| 1012056 | -- | 0 | Santiago A. Cadena, Konstantin F. Willeke, Kelli Restivo, George H. Denfield, Fabian H. Sinz, Matthias Bethge, Andreas S. Tolias, Alexander S. Ecker. Diverse task-driven modeling of macaque V4 reveals functional specialization towards semantic tasks |
| 1012058 | -- | 0 | Thirza Dado, Paolo Papale, Antonio Lozano, Lynn Le, Feng Wang, Marcel van Gerven, Pieter R. Roelfsema, Yagmur Güçlütürk, Umut Güçlü. Brain2GAN: Feature-disentangled neural encoding and decoding of visual perception in the primate brain |
| 1012059 | -- | 0 | Jason M. Müller, Katharina Moos, Till Baar, Kerstin C. Maier, Kristina Zumer, Achim Tresch. Nuclear export is a limiting factor in eukaryotic mRNA metabolism |
| 1012061 | -- | 0 | Richard Michael, Jacob Kæstel-Hansen, Peter Mørch Groth, Simon Bartels, Jesper Salomon, Pengfei Tian, Nikos S. Hatzakis, Wouter Boomsma. A systematic analysis of regression models for protein engineering |
| 1012063 | -- | 0 | Daniel L. Barton, Yow-Ren Chang, William Ducker, Jure Dobnikar. Data-driven modelling makes quantitative predictions regarding bacteria surface motility |
| 1012067 | -- | 0 | Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Betul A. Oksuz, Sergey Venev, Yao Xiao. Cooltools: Enabling high-resolution Hi-C analysis in Python |
| 1012071 | -- | 0 | Charles Mullon, Jorge Peña 0001, Laurent Lehmann. The evolution of environmentally mediated social interactions and posthumous spite under isolation by distance |
| 1012072 | -- | 0 | Yuchao Li, Difan Deng, Chris Tina Höfer, Jihye Kim, Won Do Heo, Quanbin Xu, Xuedong Liu, Zhike Zi. Liebig's law of the minimum in the TGF-β/SMAD pathway |
| 1012073 | -- | 0 | Kanyarat Jitmana, Jason I. Griffiths, Sian Fereday, Anna Defazio, David Bowtell, Frederick R. Adler. Mathematical modeling of the evolution of resistance and aggressiveness of high-grade serous ovarian cancer from patient CA-125 time series |
| 1012074 | -- | 0 | Valdemar Kargård Olsen, Jonathan R. Whitlock, Yasser Roudi. The quality and complexity of pairwise maximum entropy models for large cortical populations |
| 1012075 | -- | 0 | James Ryu, Amin Nejatbakhsh, Mahdi Torkashvand, Sahana Gangadharan, Maedeh Seyedolmohadesin, Jinmahn Kim, Liam Paninski, Vivek Venkatachalam. Versatile multiple object tracking in sparse 2D/3D videos via deformable image registration |
| 1012080 | -- | 0 | Yasuhiro Mochizuki, Norihiro Harasawa, Mayank Aggarwal, Chong Chen, Haruaki Fukuda. Foraging in a non-foraging task: Fitness maximization explains human risk preference dynamics under changing environment |
| 1012082 | -- | 0 | An Qi Zhang, Martin R. Ralph, Adam R. Stinchcombe. A mathematical model for the role of dopamine-D2 self-regulation in the production of ultradian rhythms |
| 1012085 | -- | 0 | Udaysankar Chockanathan, Krishnan Padmanabhan. Differential disruptions in population coding along the dorsal-ventral axis of CA1 in the APP/PS1 mouse model of Aβ pathology |
| 1012086 | -- | 0 | Tianqi Wei, Qinghai Guo, Barbara Webb. Learning with sparse reward in a gap junction network inspired by the insect mushroom body |
| 1012087 | -- | 0 | David Mezey, Dominik Deffner, Ralf H. J. M. Kurvers, Pawel Romanczuk. Visual social information use in collective foraging |
| 1012088 | -- | 0 | Sébastien Benzekry, Michalis Mastri, Chiara Nicolò, John M. L. Ebos. Machine-learning and mechanistic modeling of metastatic breast cancer after neoadjuvant treatment |
| 1012089 | -- | 0 | Tanmoy Sarkar, Matej Krajnc. Graph topological transformations in space-filling cell aggregates |
| 1012094 | -- | 0 | Hazal Koptagel, Seong-Hwan Jun, Joanna Hård, Jens Lagergren. Scuphr: A probabilistic framework for cell lineage tree reconstruction |
| 1012095 | -- | 0 | Vishal Rana, Jianhao Peng, Chao Pan 0003, Hanbaek Lyu, Albert Cheng, Minji Kim, Olgica Milenkovic. Interpretable online network dictionary learning for inferring long-range chromatin interactions |
| 1012096 | -- | 0 | Phoebe Asplin, Matt J. Keeling, Rebecca Mancy, Edward M. Hill. Epidemiological and health economic implications of symptom propagation in respiratory pathogens: A mathematical modelling investigation |
| 1012098 | -- | 0 | Tomas Ferreira Amaro Freire, Zhijian Hu, Kevin B. Wood, Erida Gjini. Modeling spatial evolution of multi-drug resistance under drug environmental gradients |
| 1012100 | -- | 0 | Alexander Kroll, Sahasra Ranjan, Martin J. Lercher. A multimodal Transformer Network for protein-small molecule interactions enhances predictions of kinase inhibition and enzyme-substrate relationships |
| 1012104 | -- | 0 | Nikhil Phaniraj, Rahel K. Brügger, Judith M. Burkart. Marmosets mutually compensate for differences in rhythms when coordinating vigilance |
| 1012105 | -- | 0 | Tara Hameed, Natasha Motsi, Elaine Bignell, Reiko J. Tanaka. Inferring fungal growth rates from optical density data |
| 1012106 | -- | 0 | Martina Conte, Ryan T. Woodall, Margarita Gutova, Bihong T. Chen, Mark S. Shiroishi, Christine E. Brown, Jennifer M. Munson, Russell C. Rockne. Structural and practical identifiability of contrast transport models for DCE-MRI |
| 1012107 | -- | 0 | István Oszoli, István Zachar. Group-selection via aggregative propagule-formation enables cooperative multicellularity in an individual based, spatial model |
| 1012110 | -- | 0 | Albert Albesa-González, Claudia Clopath. Learning with filopodia and spines: Complementary strong and weak competition lead to specialized, graded, and protected receptive fields |
| 1012111 | -- | 0 | Claudia Pascovich, Diego Serantes, Alejo Rodriguez, Diego Mateos, Joaquín González, Diego Gallo, Mayda Rivas, Andrea Devera, Patricia Lagos, Nicolás Rubido, Pablo Torterolo. Dorsal and median raphe neuronal firing dynamics characterized by nonlinear measures |
| 1012113 | -- | 0 | Meng Wang, Xinyue Yan, Yanan Dong, Xiaoqin Li, Bin Gao. Machine learning and multi-omics data reveal driver gene-based molecular subtypes in hepatocellular carcinoma for precision treatment |
| 1012118 | -- | 0 | Feng Jiao, Jing Li, Ting Liu, Yifeng Zhu, Wenhao Che, Leonidas Bleris, Chen Jia. What can we learn when fitting a simple telegraph model to a complex gene expression model? |
| 1012119 | -- | 0 | Milena Rmus, Ti-Fen Pan, Liyu Xia, Anne G. E. Collins. Artificial neural networks for model identification and parameter estimation in computational cognitive models |
| 1012124 | -- | 0 | Alexander Massey, Corentin Boennec, Claudia Ximena Restrepo-Ortiz, Christophe Blanchet, Samuel Alizon, Mircea Sofonea. Real-time forecasting of COVID-19-related hospital strain in France using a non-Markovian mechanistic model |
| 1012127 | -- | 0 | Philippe Nguyen, Jinani Sooriyaarachchi, Qianyu Huang, Curtis L. Baker Jr.. Estimating receptive fields of simple and complex cells in early visual cortex: A convolutional neural network model with parameterized rectification |
| 1012128 | -- | 0 | Thomas Hladish, Alexander N. Pillai, Carl A. B. Pearson, Kok Ben Toh, Andrea C. Tamayo, Arlin Stoltzfus, Ira M. Longini. Evaluating targeted COVID-19 vaccination strategies with agent-based modeling |
| 1012130 | -- | 0 | Marko Sterk, Yaowen Zhang, Viljem Pohorec, Eva Paradiz Leitgeb, Jurij Dolensek, Richard K. P. Benninger, Andraz Stozer, Vira Kravets, Marko Gosak. Network representation of multicellular activity in pancreatic islets: Technical considerations for functional connectivity analysis |
| 1012132 | -- | 0 | Andre J. Faure, Ben Lehner, Verónica Miró Pina, Claudia Serrano Colome, Donate Weghorn. An extension of the Walsh-Hadamard transform to calculate and model epistasis in genetic landscapes of arbitrary shape and complexity |
| 1012133 | -- | 0 | Agastya Mondal, Héctor M. Sánchez C., John M. Marshall. MGDrivE 3: A decoupled vector-human framework for epidemiological simulation of mosquito genetic control tools and their surveillance |
| 1012135 | -- | 0 | Kerr Ding, Jiaqi Luo, Yunan Luo. Leveraging conformal prediction to annotate enzyme function space with limited false positives |
| 1012136 | -- | 0 | Tong Liu, Hao Zhu, Zheng Wang 0049. Learning Micro-C from Hi-C with diffusion models |
| 1012137 | -- | 0 | Akseli Niemelä, Artturi Koivuniemi. Systematic evaluation of lecithin:cholesterol acyltransferase binding sites in apolipoproteins via peptide based nanodiscs: regulatory role of charged residues at positions 4 and 7 |
| 1012139 | -- | 0 | Zachary S. L. Foster, Andrew S. Tupper, Caroline M. Press, Niklaus J. Grünwald. Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data |
| 1012140 | -- | 0 | Maria J. Hagelaars, Milica Nikolic, Maud Vermeulen, Sylvia Dekker, Carlijn V. C. Bouten, Sandra Loerakker. A computational analysis of the role of integrins and Rho-GTPases in the emergence and disruption of apical-basal polarization in renal epithelial cells |
| 1012141 | -- | 0 | Thomas Rawson, Wes Hinsley, Raphael Sonabend, Elizaveta Semenova, Anne Cori, Neil M. Ferguson. The impact of health inequity on spatial variation of COVID-19 transmission in England |
| 1012144 | -- | 0 | Giacomo Janson, Michael Feig. Transferable deep generative modeling of intrinsically disordered protein conformations |
| 1012145 | -- | 0 | Xi Chen, Tamás I. Józsa, Danilo Cardim, Chiara Robba, Marek Czosnyka, Stephen J. Payne. Modelling midline shift and ventricle collapse in cerebral oedema following acute ischaemic stroke |
| 1012146 | -- | 0 | Lucy Lansch-Justen, Meriem El Karoui, Helen K. Alexander. Estimating mutation rates under heterogeneous stress responses |
| 1012158 | -- | 0 | Trini Nguyen, Babu Reddy Janakaloti Narayanareddy, Steven P. Gross, Christopher E. Miles. Competition between physical search and a weak-to-strong transition rate-limits kinesin binding times |
| 1012161 | -- | 0 | Amber Marijn Brands, Sasha Devore, Orrin Devinsky, Werner K. Doyle, Adeen Flinker, Daniel Friedman, Patricia Dugan, Jonathan Winawer, Iris Isabelle Anna Groen. Temporal dynamics of short-term neural adaptation across human visual cortex |
| 1012164 | -- | 0 | Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey Venev. Pairtools: From sequencing data to chromosome contacts |
| 1012169 | -- | 0 | Garrick W. Bruening, Robert J. Courter, Shruthi Sukumar, Megan K. O'Brien, Alaa A. Ahmed. Disentangling the effects of metabolic cost and accuracy on movement speed |
| 1012175 | -- | 0 | Franz Wurm, Benjamin Ernst, Marco Steinhauser. Surprise-minimization as a solution to the structural credit assignment problem |
| 1012186 | -- | 0 | Lulu Gong 0001, Fabio Pasqualetti, Thomas Papouin, ShiNung Ching. Astrocytes as a mechanism for contextually-guided network dynamics and function |