| 0 | -- | 0 | Ruochen Yang, Xi Chen, Idoia Ochoa. MassComp, a lossless compressor for mass spectrometry data |
| 0 | -- | 0 | Yuexi Gu, Jian Zu, Yu Li. A novel evolutionary model for constructing gene coexpression networks with comprehensive features |
| 0 | -- | 0 | Linus Scheibenreif, Maria Littmann, Christine A. Orengo, Burkhard Rost. FunFam protein families improve residue level molecular function prediction |
| 0 | -- | 0 | Reagon Karki, Alpha Tom Kodamullil, Charles Tapley Hoyt, Martin Hofmann-Apitius. Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm |
| 0 | -- | 0 | Lech Nieroda, Lukas Maas, Scott Thiebes, Ulrich Lang, Ali Sunyaev, Viktor Achter, Martin Peifer. iRODS metadata management for a cancer genome analysis workflow |
| 0 | -- | 0 | Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki. RNA 3D structure prediction guided by independent folding of homologous sequences |
| 0 | -- | 0 | Pengfei Wang, Wensheng Zhu. Replicability analysis in genome-wide association studies via Cartesian hidden Markov models |
| 0 | -- | 0 | Mohamed K. Gunady, Stephen M. Mount, Héctor Corrada Bravo. Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis |
| 0 | -- | 0 | Sam Tracy, Guo-Cheng Yuan, Ruben Dries. RESCUE: imputing dropout events in single-cell RNA-sequencing data |
| 0 | -- | 0 | Huiwei Zhou, Chengkun Lang, Zhuang Liu 0001, Shixian Ning, Yingyu Lin, Lei Du. Knowledge-guided convolutional networks for chemical-disease relation extraction |
| 0 | -- | 0 | Maarten W. Paul, H. Martijn de Gruiter, Zhanmin Lin, Willy M. Baarends, Wiggert A. van Cappellen, Adriaan B. Houtsmuller, Johan A. Slotman. SMoLR: visualization and analysis of single-molecule localization microscopy data in R |
| 0 | -- | 0 | Yi Li, Yanan Liu, Yiming Wu, Xudong Zhao 0002. JCD-DEA: a joint covariate detection tool for differential expression analysis on tumor expression profiles |
| 0 | -- | 0 | Stanislav Listopad, Trina M. Norden-Krichmar. A-Lister: a tool for analysis of differentially expressed omics entities across multiple pairwise comparisons |
| 0 | -- | 0 | Bihai Zhao, Yulin Zhao, Xiaoxia Zhang, Zhihong Zhang, Fan Zhang, Lei Wang 0069. An iteration method for identifying yeast essential proteins from heterogeneous network |
| 0 | -- | 0 | Eric T. Dawson, Sarah Wagner, David Roberson, Meredith Yeager, Joseph Boland, Erik Garrison, Stephen J. Chanock, Mark Schiffman, Tina Raine-Bennett, Thomas Lorey, Phillip E. Castle, Lisa Mirabello, Richard Durbin. Viral coinfection analysis using a MinHash toolkit |
| 0 | -- | 0 | Jingrong Zhang, Zihao Wang, Yu Chen, Renmin Han, Zhiyong Liu, Fei Sun, Fa Zhang. PIXER: an automated particle-selection method based on segmentation using a deep neural network |
| 0 | -- | 0 | Ya-Chi Lin, Yueh-Chun Lee, Kai-Li Chang, Kuei-Yang Hsiao. Analysis of common targets for circular RNAs |
| 0 | -- | 0 | Efthymia Chantzi, Malin Jarvius, Mia Niklasson, Anna Segerman, Mats G. Gustafsson. COMBImage2: a parallel computational framework for higher-order drug combination analysis that includes automated plate design, matched filter based object counting and temporal data mining |
| 0 | -- | 0 | Mahdi Heydari, Giles Miclotte, Yves Van de Peer, Jan Fostier. Illumina error correction near highly repetitive DNA regions improves de novo genome assembly |
| 0 | -- | 0 | Jinghang Gu, Fuqing Sun, Longhua Qian, Guodong Zhou. Chemical-induced disease relation extraction via attention-based distant supervision |
| 0 | -- | 0 | Yongchun Lü, Xiangrui Zeng, Xiaofang Zhao, Shirui Li, Hua Li, Xin Gao 0001, Min Xu 0009. Fine-grained alignment of cryo-electron subtomograms based on MPI parallel optimization |
| 0 | -- | 0 | Thomas Hiscock. Adapting machine-learning algorithms to design gene circuits |
| 0 | -- | 0 | Michael C. Rendleman, John M. Buatti, Terry A. Braun, Brian J. Smith, Chibuzo Nwakama, Reinhard R. Beichel, Bartley Brown, Thomas L. Casavant. Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality |
| 0 | -- | 0 | Eun-Youn Kim, Daniel Ashlock, Sung Ho Yoon. Identification of critical connectors in the directed reaction-centric graphs of microbial metabolic networks |
| 0 | -- | 0 | Asma Ben Abacha, Dina Demner-Fushman. A question-entailment approach to question answering |
| 0 | -- | 0 | Miriam Gjerdevik, Astanand Jugessur, Øystein A. Haaland, Julia Romanowska, Rolv T. Lie, Heather J. Cordell, Håkon K. Gjessing. Haplin power analysis: a software module for power and sample size calculations in genetic association analyses of family triads and unrelated controls |
| 0 | -- | 0 | Nhan Thi Ho, Fan Li, Shuang Wang, Louise Kuhn. metamicrobiomeR: an R package for analysis of microbiome relative abundance data using zero-inflated beta GAMLSS and meta-analysis across studies using random effects models |
| 0 | -- | 0 | Nauman Ahmed, Jonathan Levy, Shanshan Ren, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars. GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data |
| 0 | -- | 0 | Yang Guo, Zhiman Zhong, Chen Yang, Jiangfeng Hu, Yaling Jiang, Zizhen Liang, Hui Gao, Jianxiao Liu. Epi-GTBN: an approach of epistasis mining based on genetic Tabu algorithm and Bayesian network |
| 0 | -- | 0 | Aljaz Gaber, Gregor Guncar, Miha Pavsic. Proper evaluation of chemical cross-linking-based spatial restraints improves the precision of modeling homo-oligomeric protein complexes |
| 0 | -- | 0 | Matthew McCoy, Vikram Shivakumar, Sridhar Nimmagadda, Mohsin Saleet Jafri, Subha Madhavan. SNP2SIM: a modular workflow for standardizing molecular simulation and functional analysis of protein variants |
| 0 | -- | 0 | Jingwen Yu, Zhanwei Xuan, Xiang Feng, Quan Zou, Lei Wang 0069. A novel collaborative filtering model for LncRNA-disease association prediction based on the Naïve Bayesian classifier |
| 0 | -- | 0 | Xiaoshuang Liu, Zhenhe Yan, Chao Wu, Yang Yang, Xiaomin Li, Guangxin Zhang. FastProNGS: fast preprocessing of next-generation sequencing reads |
| 0 | -- | 0 | Marco Russo, Bruno De Lucca, Tiziano Flati, Silvia Gioiosa, Giovanni Chillemi, Giovanni Capranico. DROPA: DRIP-seq optimized peak annotator |
| 0 | -- | 0 | Alejandro Saettone, Marcelo Ponce, Syed Nabeel-Shah, Jeffrey Fillingham. RACS: rapid analysis of ChIP-Seq data for contig based genomes |
| 0 | -- | 0 | Debangana Chakravorty, Krishnendu Banerjee, Tarunendu Mapder, Sudipto Saha. In silico modeling of phosphorylation dependent and independent c-Myc degradation |
| 0 | -- | 0 | Nathan Lapierre, Rob Egan, Wei Wang, Zhong Wang. De novo Nanopore read quality improvement using deep learning |
| 0 | -- | 0 | T. J. M. Kuijpers, J. E. J. Wolters, Jos C. S. Kleinjans, Danyel G. J. Jennen. DynOVis: a web tool to study dynamic perturbations for capturing dose-over-time effects in biological networks |
| 0 | -- | 0 | Yonghyun Nam, Dong-Gi Lee, Sunjoo Bang, Ju Han Kim, Jae-Hoon Kim 0004, Hyunjung Shin. The translational network for metabolic disease - from protein interaction to disease co-occurrence |
| 0 | -- | 0 | Lixin Cheng, Pengfei Liu, Dong Wang, Kwong-Sak Leung. Exploiting locational and topological overlap model to identify modules in protein interaction networks |
| 0 | -- | 0 | Davide Heller, Damian Szklarczyk, Christian von Mering. Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies |
| 0 | -- | 0 | M. Shaffer, K. Thurimella, K. Quinn, K. Doenges, X. Zhang, S. Bokatzian, Nichole Reisdorph, Catherine A. Lozupone. AMON: annotation of metabolite origins via networks to integrate microbiome and metabolome data |
| 0 | -- | 0 | Irina Kuznetsova, Artur Lugmayr, Stefan J. Siira, Oliver Rackham, Aleksandra Filipovska. CirGO: an alternative circular way of visualising gene ontology terms |
| 0 | -- | 0 | Guangsheng Wu, Juan Liu, Xiang Yue. Prediction of drug-disease associations based on ensemble meta paths and singular value decomposition |
| 0 | -- | 0 | Qiu Xiao, Jiawei Luo, Cheng Liang, Jie Cai, Guanghui Li 0003, Buwen Cao. CeModule: an integrative framework for discovering regulatory patterns from genomic data in cancer |
| 0 | -- | 0 | Mingjian Jiang, Zhen Li, Yujie Bian, Zhiqiang Wei. A novel protein descriptor for the prediction of drug binding sites |
| 0 | -- | 0 | Lennon Meléndez-Aranda, Ana Rebeca Jaloma-Cruz, Nina Pastor, Marina María de Jesús Romero-Prado. In silico analysis of missense mutations in exons 1-5 of the F9 gene that cause hemophilia B |
| 0 | -- | 0 | Marina Esteban-Medina, María Peña-Chilet, Carlos Loucera, Joaquín Dopazo. Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models |
| 0 | -- | 0 | Mi-Youn K. Brusniak, Hector Ramos, Bernard Lee, James M. Olson. Laboratory information management software for engineered mini-protein therapeutic workflow |
| 0 | -- | 0 | Lyuba V. Bozhilova, Alan Whitmore, Jonny Wray, Gesine Reinert, Charlotte M. Deane. Measuring rank robustness in scored protein interaction networks |
| 0 | -- | 0 | Yoann Dufresne, Franck Lejzerowicz, Laure Apotheloz Perret-Gentil, Jan Pawlowski, Tristan Cordier. SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data |
| 0 | -- | 0 | Chung-Yen Chen, Sen-Lin Tang, Seng-cho T. Chou. Taxonomy based performance metrics for evaluating taxonomic assignment methods |
| 0 | -- | 0 | Congzhe Su, Jeffery D. Weir, Fei Zhang, Hao Yan, Teresa Wu. ENTRNA: a framework to predict RNA foldability |
| 0 | -- | 0 | Bing Zhang 0011, Huihui Ren, Guoyan Huang, Yongqiang Cheng, Changzhen Hu. Predicting blood pressure from physiological index data using the SVR algorithm |
| 0 | -- | 0 | Konstantinos Pliakos, Celine Vens. Network inference with ensembles of bi-clustering trees |
| 0 | -- | 0 | Yulia Panina, Arno Germond, Brit G. David, Tomonobu M. Watanabe. Pairwise efficiency: a new mathematical approach to qPCR data analysis increases the precision of the calibration curve assay |
| 0 | -- | 0 | Alejandro Lopez Rincon, Marlet Martinez-Archundia, Gustavo U. Martinez-Ruiz, Alexander Schönhuth, Alberto Paolo Tonda. Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection |
| 0 | -- | 0 | Poomarin Phloyphisut, Natapol Pornputtapong, Sira Sriswasdi, Ekapol Chuangsuwanich. MHCSeqNet: a deep neural network model for universal MHC binding prediction |
| 0 | -- | 0 | Najaf A. Shah, Casim A. Sarkar. Variable cellular decision-making behavior in a constant synthetic network topology |
| 0 | -- | 0 | Tianjun Li, Long Chen 0001, Min Gan. Quality control of imbalanced mass spectra from isotopic labeling experiments |
| 0 | -- | 0 | Hezha Hassan, Siba Shanak. GOTrapper: a tool to navigate through branches of gene ontology hierarchy |
| 0 | -- | 0 | Anghong Xiao, Zongze Wu, Shoubin Dong. ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark |
| 0 | -- | 0 | Jurica Seva, David Luis Wiegandt, Julian Goetze, Mario Lamping, Damian Rieke, Reinhold Schaefer, Patrick Jähnichen, Madeleine Kittner, Steffen Pallarz, Johannes Starlinger, Ulrich Keilholz, Ulf Leser. VIST - a Variant-Information Search Tool for precision oncology |
| 0 | -- | 0 | Jiao Chen, Jiayu Shang, Jianrong Wang, Yanni Sun. A binning tool to reconstruct viral haplotypes from assembled contigs |
| 0 | -- | 0 | Tobias B. Alter, Birgitta E. Ebert. Determination of growth-coupling strategies and their underlying principles |
| 0 | -- | 0 | Ine Melckenbeeck, Pieter Audenaert, Thomas Van Parys, Yves Van de Peer, Didier Colle, Mario Pickavet. Optimising orbit counting of arbitrary order by equation selection |
| 0 | -- | 0 | Qiangwei Zhou, Jing-Quan Lim, Wing-Kin Sung, Guoliang Li 0002. An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping |
| 0 | -- | 0 | Noemi Di Nanni, Marco Moscatelli, Matteo Gnocchi, Luciano Milanesi, Ettore Mosca. isma: an R package for the integrative analysis of mutations detected by multiple pipelines |
| 0 | -- | 0 | Ross Mawhorter, Ran Libeskind-Hadas. Hierarchical clustering of maximum parsimony reconciliations |
| 0 | -- | 0 | Julián Candia, John S. Tsang. eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models |
| 0 | -- | 0 | Licheng Wang, Jingwen Suo, Yun Pan, Lixiang Li. DDmap: a MATLAB package for the double digest problem using multiple genetic operators |
| 0 | -- | 0 | Till Köster, Philipp Henning, Adelinde M. Uhrmacher. Potential based, spatial simulation of dynamically nested particles |
| 0 | -- | 0 | Minoo Ashtiani, Payman Nickchi, Soheil Jahangiri-Tazehkand, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari. IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, mapping and mining analysis |
| 0 | -- | 0 | Lei Cui, Jun Feng 0003, Zizhao Zhang, Lin Yang. High throughput automatic muscle image segmentation using parallel framework |
| 0 | -- | 0 | Fuyong Xing, Yuanpu Xie, Xiaoshuang Shi, Pingjun Chen, Zizhao Zhang, Lin Yang 0002. Correction to: Towards pixel-to-pixel deep nucleus detection in microscopy images |
| 0 | -- | 0 | Jin Yao, Mark Hurle, Matthew R. Nelson, Pankaj Agarwal. Predicting clinically promising therapeutic hypotheses using tensor factorization |
| 0 | -- | 0 | Pascal Dolejsch, Helge Hass, Jens Timmer. Extensions of ℓ 1 regularization increase detection specificity for cell-type specific parameters in dynamic models |
| 0 | -- | 0 | Daniel J. Giguere, Jean M. Macklaim, Brandon Y. Lieng, Gregory B. Gloor. omicplotR: visualizing omic datasets as compositions |
| 0 | -- | 0 | Maryam Masnadi-Shirazi, Mano Ram Maurya, Gerald Pao, Eugene Ke, Inder M. Verma, Shankar Subramaniam. Time varying causal network reconstruction of a mouse cell cycle |
| 0 | -- | 0 | Mischa Schwendy, Ronald E. Unger, Mischa Bonn, Sapun H. Parekh. Automated cell segmentation in FIJI® using the DRAQ5 nuclear dye |
| 0 | -- | 0 | Richard Border, Stephen Becker. Stochastic Lanczos estimation of genomic variance components for linear mixed-effects models |
| 0 | -- | 0 | Alexandra R. Buckley, Trey Ideker, Hannah Carter, Nicholas J. Schork. Rare variant phasing using paired tumor: normal sequence data |
| 0 | -- | 0 | Yifan Jiang, Yao Jiang, Sheng Wang, Qin Zhang, Xiangdong Ding. Optimal sequencing depth design for whole genome re-sequencing in pigs |
| 0 | -- | 0 | Dong Wei, Chuanying Liu, Xiaoqi Zheng, Yushuang Li. Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model |
| 0 | -- | 0 | Audrey Mauguen, Venkatraman E. Seshan, Irina Ostrovnaya, Colin B. Begg. An EM algorithm to improve the estimation of the probability of clonal relatedness of pairs of tumors in cancer patients |
| 0 | -- | 0 | Andrea Degl'Innocenti, Gabriella Meloni, Barbara Mazzolai, Gianni Ciofani. A purely bioinformatic pipeline for the prediction of mammalian odorant receptor gene enhancers |
| 0 | -- | 0 | Xinxing Yang, lbrahim Zamit, Yu Liu, Jieyue He. Additional Neural Matrix Factorization model for computational drug repositioning |
| 0 | -- | 0 | Mindaugas Margelevicius. Estimating statistical significance of local protein profile-profile alignments |
| 0 | -- | 0 | Yongzhi Yang, Ying Li, Qiao Chen, Yongshuai Sun, Zhiqiang Lu. WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations |
| 0 | -- | 0 | Bruno Thiago de Lima Nichio, Aryel Marlus Repula de Oliveira, Camilla Reginatto de Pierri, Leticia Graziela Costa Santos, Alexandre Quadros Lejambre, Ricardo Assunção Vialle, Nilson Antônio da Rocha Coimbra, Dieval Guizelini, Jeroniza Nunes Marchaukoski, Fábio de Oliveira Pedrosa, Roberto Tadeu Raittz. RAFTS3G: an efficient and versatile clustering software to analyses in large protein datasets |
| 0 | -- | 0 | Fuyi Li, Yang Zhang 0010, Anthony W. Purcell, Geoffrey I. Webb, Kuo-Chen Chou, Trevor Lithgow, Chen Li 0021, Jiangning Song. Positive-unlabelled learning of glycosylation sites in the human proteome |
| 0 | -- | 0 | Yan Zhou, Jiadi Zhu, Tiejun Tong, Junhui Wang, Bingqing Lin, Jun Zhang. A statistical normalization method and differential expression analysis for RNA-seq data between different species |
| 0 | -- | 0 | Tobias Neumann, Veronika A. Herzog, Matthias Muhar, Arndt von Haeseler, Johannes Zuber, Stefan L. Ameres, Philipp Rescheneder. Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets |
| 0 | -- | 0 | Qiao Ning, Miao Yu, Jinchao Ji, Zhiqiang Ma, Xiaowei Zhao. Analysis and prediction of human acetylation using a cascade classifier based on support vector machine |
| 0 | -- | 0 | Lang Yang, Xia Zhang, Yuqi Liu, Hao Li, Shaofu Qiu, Peng Li, Hongbin Song. CSESA: an R package to predict Salmonella enterica serotype based on newly incorporated spacer pairs of CRISPR |
| 0 | -- | 0 | Huimin Lei, Wenxu Liu, Jiarui Si, Ju Wang, Tao Zhang. Analyzing the regulation of miRNAs on protein-protein interaction network in Hodgkin lymphoma |
| 0 | -- | 0 | Jun Ruan, Zhen Liu, Ming Sun, Yue Wang, Junqiu Yue, Guoqiang Yu. DBS: a fast and informative segmentation algorithm for DNA copy number analysis |
| 0 | -- | 0 | Christoph Ruttkies, Steffen Neumann, Stefan Posch. Improving MetFrag with statistical learning of fragment annotations |
| 0 | -- | 0 | Paula Pérez-Rubio, Claudio Lottaz, Julia C. Engelmann. FastqPuri: high-performance preprocessing of RNA-seq data |
| 0 | -- | 0 | Sunita Chandrasekaran, Eric Stahlberg. Correction to: Computational approaches for cancer 2017 workshop overview |
| 0 | -- | 0 | Xiaolong Zhang, Yanyan Shao, Jichao Tian, Yuwei Liao, Peiying Li, Yu Zhang, Jun Chen, Zhiguang Li. pTrimmer: An efficient tool to trim primers of multiplex deep sequencing data |
| 0 | -- | 0 | Wei Zhou, Xiaojuan He, Ziyi Chen, Danping Fan, Yonghua Wang, Hui Feng, Ge Zhang, Aiping Lu, Lianbo Xiao. LncRNA HOTAIR-mediated Wnt/β-catenin network modeling to predict and validate therapeutic targets for cartilage damage |
| 0 | -- | 0 | Leanne S. Whitmore, Bernard Nguyen, Ali Pinar, Anthe George, Corey M. Hudson. RetSynth: determining all optimal and sub-optimal synthetic pathways that facilitate synthesis of target compounds in chassis organisms |
| 0 | -- | 0 | Christopher Grace, Martin Farrall, Hugh Watkins, Anuj Goel. Manhattan++: displaying genome-wide association summary statistics with multiple annotation layers |
| 0 | -- | 0 | Akshay Tambe, Lior Pachter. Barcode identification for single cell genomics |
| 0 | -- | 0 | Mohamed Reda Bouadjenek, Justin Zobel, Karin Verspoor. Automated assessment of biological database assertions using the scientific literature |
| 0 | -- | 0 | Chia-Ying Chen, Trees-Juen Chuang. NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors |
| 0 | -- | 0 | Marie Postel, Alice Karam, Guillaume Pézeron, Sylvie Schneider-Maunoury, Frédérique Clément. A multiscale mathematical model of cell dynamics during neurogenesis in the mouse cerebral cortex |
| 0 | -- | 0 | Matthew L. Hale, Ishwor Thapa, Dario Ghersi. FunSet: an open-source software and web server for performing and displaying Gene Ontology enrichment analysis |
| 0 | -- | 0 | Dace Ruklisa, Alvis Brazma, Karlis Cerans, Thomas Schlitt, Juris Viksna. Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters - the case of phage λ |
| 0 | -- | 0 | Jing Xu, Peng Wu, Yuehui Chen, Qingfang Meng, Hussain Dawood, Hassan Dawood. A hierarchical integration deep flexible neural forest framework for cancer subtype classification by integrating multi-omics data |
| 0 | -- | 0 | Russul Alanni, Jingyu Hou, Hasseeb Azzawi, Yong Xiang 0001. Deep gene selection method to select genes from microarray datasets for cancer classification |
| 0 | -- | 0 | Vu VH Pham, Junpeng Zhang, Lin Liu 0003, Buu Minh Thanh Truong, Taosheng Xu, Trung T. Nguyen, Jiuyong Li, Thuc Duy Le. Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction |
| 0 | -- | 0 | Wei Zheng, Dingjie Wang, Xiufen Zou. Control of multilayer biological networks and applied to target identification of complex diseases |
| 0 | -- | 0 | Adil Al-Azzawi, Anes Ouadou, John J. Tanner, Jianlin Cheng. AutoCryoPicker: an unsupervised learning approach for fully automated single particle picking in Cryo-EM images |
| 0 | -- | 0 | Marcelo P. Segura-Lepe, Hector C. Keun, Timothy M. D. Ebbels. Predictive modelling using pathway scores: robustness and significance of pathway collections |
| 0 | -- | 0 | Karsten Wüllems, Jan Kölling, Hanna Bednarz, Karsten Niehaus, Volkmar H. Hans, Tim W. Nattkemper. Detection and visualization of communities in mass spectrometry imaging data |
| 0 | -- | 0 | Mahroo Moridi, Marzieh Ghadirinia, Ali Sharifi-Zarchi, Fatemeh Zare-Mirakabad. The assessment of efficient representation of drug features using deep learning for drug repositioning |
| 0 | -- | 0 | Neerja Thakkar, Chris Bailey-Kellogg. Balancing sensitivity and specificity in distinguishing TCR groups by CDR sequence similarity |
| 0 | -- | 0 | Kipoong Kim, Hokeun Sun. Incorporating genetic networks into case-control association studies with high-dimensional DNA methylation data |
| 0 | -- | 0 | Rodolfo S. Allendes Osorio, Lokesh P. Tripathi, Kenji Mizuguchi. CLINE: a web-tool for the comparison of biological dendrogram structures |
| 0 | -- | 0 | Yunyun Dong, Wenkai Yang, Jiawen Wang, Juanjuan Zhao, Yan Qiang, Zijuan Zhao, Ntikurako Guy-Fernand Kazihise, Yanfen Cui, Xiaotong Yang, Siyuan Liu. MLW-gcForest: a multi-weighted gcForest model towards the staging of lung adenocarcinoma based on multi-modal genetic data |
| 0 | -- | 0 | Rebecca C. Jackson, James P. Balhoff, Eric Douglass, Nomi L. Harris, Christopher J. Mungall, James A. Overton. ROBOT: A Tool for Automating Ontology Workflows |
| 0 | -- | 0 | Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Liang Yang 0003, Bo Xu, Zhihao Yang, Jian Wang 0021, Yijia Zhang. Adverse drug reaction detection via a multihop self-attention mechanism |
| 0 | -- | 0 | Jiao Chen, Jiating Huang, Yanni Sun. TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data |
| 0 | -- | 0 | Jeremy P. Koelmel, Jason A. Cochran, Candice Z. Ulmer, Allison J. Levy, Rainey E. Patterson, Berkley C. Olsen, Richard A. Yost, John A. Bowden, Timothy J. Garrett. Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values |
| 0 | -- | 0 | Bie M. P. Verbist, Eva Adriaensen, Vikki Keersmaekers, Dea Putri, Marjolein Crabbe, Maarten Derks, Rytis Bagdziunas, Griet Laenen, Hans De Wolf. Analyzing magnetic bead QuantiGene® Plex 2.0 gene expression data in high throughput mode using QGprofiler |
| 0 | -- | 0 | Janet C. Siebert, Charles Preston Neff, Jennifer M. Schneider, Emilie H. Regner, Neha Ohri, Kristine A. Kuhn, Brent E. Palmer, Catherine A. Lozupone, Carsten Görg. VOLARE: visual analysis of disease-associated microbiome-immune system interplay |
| 0 | -- | 0 | Simonas Marcisauskas, Boyang Ji, Jens Nielsen. Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model |
| 0 | -- | 0 | Burçak Otlu, Tolga Can. JOA: Joint Overlap Analysis of multiple genomic interval sets |
| 0 | -- | 0 | Bhusan K. Kuntal, Anirban Dutta, Sharmila S. Mande. Correction to: CompNet: a GUI based tool for comparison of multiple biological interaction networks |
| 0 | -- | 0 | Christine Winter, Robin Kosch, Martin Ludlow, Albert Osterhaus, Klaus Jung. Network meta-analysis correlates with analysis of merged independent transcriptome expression data |
| 0 | -- | 0 | Mehdi Mirzaie. Identification of native protein structures captured by principal interactions |
| 0 | -- | 0 | Emily E. Ackerman, John F. Alcorn, Takeshi Hase, Jason E. Shoemaker. A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery |
| 0 | -- | 0 | Di Du, Lin Tan, Yumeng Wang, Bo Peng, John N. Weinstein, Fredric E. Wondisford, Xiaoyang Su, Philip L. Lorenzi. ElemCor: accurate data analysis and enrichment calculation for high-resolution LC-MS stable isotope labeling experiments |
| 0 | -- | 0 | Ronald Smith, Taliesin J. Kinser, Gregory D. Conradi Smith, Joshua R. Puzey. A likelihood ratio test for changes in homeolog expression bias |
| 0 | -- | 0 | Ruijie Song, Murat Acar. Stochastic modeling of aging cells reveals how damage accumulation, repair, and cell-division asymmetry affect clonal senescence and population fitness |
| 0 | -- | 0 | Arash Bayat, Bruno Gaëta, Aleksandar Ignjatovic, Sri Parameswaran. Pairwise alignment of nucleotide sequences using maximal exact matches |
| 0 | -- | 0 | Alexander Davis, Ruli Gao, Nicholas E. Navin. SCOPIT: sample size calculations for single-cell sequencing experiments |
| 0 | -- | 0 | Aditya Sai, Nan Kong. Exploring the information transmission properties of noise-induced dynamics: application to glioma differentiation |
| 0 | -- | 0 | Suzanne M. Paley, Peter D. Karp. The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database |
| 0 | -- | 0 | Huan Jin, Hunter N. B. Moseley. Moiety modeling framework for deriving moiety abundances from mass spectrometry measured isotopologues |
| 0 | -- | 0 | Lea M. Urpa, Simon Anders. Focused multidimensional scaling: interactive visualization for exploration of high-dimensional data |
| 0 | -- | 0 | Lars Feuerbach, Lina Sieverling, Katharina I. Deeg, Philip Ginsbach, Barbara Hutter, Ivo Buchhalter, Paul A. Northcott, Sadaf S. Mughal, Priya Chudasama, Hanno Glimm, Claudia Scholl, Peter Lichter, Stefan Fröhling, Stefan M. Pfister, David T. W. Jones, Karsten Rippe, Benedikt Brors. TelomereHunter - in silico estimation of telomere content and composition from cancer genomes |
| 0 | -- | 0 | Zheng Gao, Gang Fu, Chunping Ouyang, Satoshi Tsutsui, Xiaozhong Liu, Jeremy J. Yang, Christopher Gessner, Brian Foote, David J. Wild 0001, Ying Ding, Qi Yu. edge2vec: Representation learning using edge semantics for biomedical knowledge discovery |
| 0 | -- | 0 | Thomas Lemmin, Cinque S. Soto. Glycosylator: a Python framework for the rapid modeling of glycans |
| 0 | -- | 0 | Sree K. Chanumolu, Mustafa Albahrani, Hasan H. Otu. FQStat: a parallel architecture for very high-speed assessment of sequencing quality metrics |
| 0 | -- | 0 | Xiaochuan Wang, Chen Li, Fuyi Li, Varun S. Sharma, Jiangning Song, Geoffrey I. Webb. SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning models |
| 0 | -- | 0 | Joanna Roder, Carlos Oliveira, Lelia Net, Maxim Tsypin, Benjamin Linstid, Heinrich Roder. A dropout-regularized classifier development approach optimized for precision medicine test discovery from omics data |
| 0 | -- | 0 | Paolo Perlasca, Marco Frasca 0001, Cheick Tidiane Ba, Marco Notaro, Alessandro Petrini, Elena Casiraghi, Giuliano Grossi, Jessica Gliozzo, Giorgio Valentini, Marco Mesiti. UNIPred-Web: a web tool for the integration and visualization of biomolecular networks for protein function prediction |
| 0 | -- | 0 | Yu Xu, Zhe Lin, Chong Tang, Yujing Tang, Yue Cai, Hongbin Zhong, Xuebin Wang, Wenwei Zhang, Chongjun Xu, Jingjing Wang, Jian Wang, Huanming Yang, Linfeng Yang, Qiang Gao. A new massively parallel nanoball sequencing platform for whole exome research |
| 0 | -- | 0 | Fang-Dong Li, Wei Tong, En-Hua Xia, Chao-Ling Wei. Optimized sequencing depth and de novo assembler for deeply reconstructing the transcriptome of the tea plant, an economically important plant species |
| 0 | -- | 0 | Mischa Schwendy, Ronald E. Unger, Mischa Bonn, Sapun H. Parekh. Automated cell segmentation in FIJI® using the DRAQ5 nuclear dye |
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| 0 | -- | 0 | Ying-Lian Gao, Zhen Cui, Jin-Xing Liu, Juan Wang, Chun-Hou Zheng. NPCMF: Nearest Profile-based Collaborative Matrix Factorization method for predicting miRNA-disease associations |
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| 0 | -- | 0 | Dat Quoc Nguyen, Karin Verspoor. From POS tagging to dependency parsing for biomedical event extraction |
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| 0 | -- | 0 | Pengfei Liu, Hongjian Li, Shuai Li, Kwong-Sak Leung. Improving prediction of phenotypic drug response on cancer cell lines using deep convolutional network |
| 0 | -- | 0 | Lifan Liang, Vicky Chen, Kunju Zhu, Xiaonan Fan, Xinghua Lu, Songjian Lu. Integrating data and knowledge to identify functional modules of genes: a multilayer approach |
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| 0 | -- | 0 | Xiaonan Fan, ShaoWu Zhang, Songyao Zhang, Kunju Zhu, Songjian Lu. Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information |
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| 0 | -- | 0 | Sunjoo Bang, Sangjoon Son, Sooyoung Kim, Hyunjung Shin. Disease Pathway Cut for Multi-Target drugs |
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| 0 | -- | 0 | David F. Nettleton, Dimitrios Katsantonis, Argyris Kalaitzidis, Natasa Sarafijanovic-Djukic, Pau Puigdollers, Roberto Confalonieri 0002. Predicting rice blast disease: machine learning versus process-based models |
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| 0 | -- | 0 | Divy Kangeyan, Andrew Dunford, Sowmya Iyer, Chip Stewart, Megan Hanna, Gad Getz, Martin J. Aryee. A (fire)cloud-based DNA methylation data preprocessing and quality control platform |
| 0 | -- | 0 | Mohammed AlQuraishi. ProteinNet: a standardized data set for machine learning of protein structure |
| 0 | -- | 0 | Pawel Blazej, Malgorzata Wnetrzak, Dorota Mackiewicz, Pawel Mackiewicz. The influence of different types of translational inaccuracies on the genetic code structure |
| 0 | -- | 0 | Ousmane H. Cissé, Jason E. Stajich. FGMP: assessing fungal genome completeness |
| 0 | -- | 0 | Refael Kohen, Jonathan Barlev, Gil Hornung, Gil Stelzer, Ester Feldmesser, Kiril Kogan, Marilyn Safran, Dena Leshkowitz. UTAP: User-friendly Transcriptome Analysis Pipeline |
| 0 | -- | 0 | Andre Lamurias, Pedro Ruas, Francisco M. Couto. PPR-SSM: personalized PageRank and semantic similarity measures for entity linking |
| 0 | -- | 0 | Maryam Nazarieh, Hema Sekhar Reddy Rajula, Volkhard Helms. Topology Consistency of Disease-specific Differential Co-regulatory Networks |
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| 0 | -- | 0 | Xiangyu Wu, Zhen Wei, Kunqi Chen, Qing Zhang, Jionglong Su, Hui Liu, Lin Zhang, Jia Meng. m6Acomet: large-scale functional prediction of individual m6A RNA methylation sites from an RNA co-methylation network |
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| 0 | -- | 0 | Maria Beatriz Walter Costa, Christian Höner zu Siederdissen, Marko Dunjic, Peter F. Stadler, Katja Nowick. SSS-test: a novel test for detecting positive selection on RNA secondary structure |
| 0 | -- | 0 | Daniel G. Piqué, Grasiella A. Andriani, Elaine Maggi, Samuel E. Zimmerman, John M. Greally, Cristina Montagna, Jessica C. Mar. Aneuvis: web-based exploration of numerical chromosomal variation in single cells |
| 0 | -- | 0 | Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico. Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis |
| 0 | -- | 0 | Wenmin Zhang, Ben Jia, Chaochun Wei. PaSS: a sequencing simulator for PacBio sequencing |
| 0 | -- | 0 | Ling Zhang, Ishwor Thapa, Christian Haas, Dhundy Bastola. Multiplatform biomarker identification using a data-driven approach enables single-sample classification |
| 0 | -- | 0 | Yifeng Cui, Qiwen Dong, Daocheng Hong, Xikun Wang. Predicting protein-ligand binding residues with deep convolutional neural networks |
| 0 | -- | 0 | Leandro Gabriel Roser, Fernán Agüero, Daniel Oscar Sánchez. FastqCleaner: an interactive Bioconductor application for quality-control, filtering and trimming of FASTQ files |
| 0 | -- | 0 | Huiwen Wang, Jiadi Qiu, Haoquan Liu, Ying Xu, Ya Jia, Yunjie Zhao. HKPocket: human kinase pocket database for drug design |
| 0 | -- | 0 | Ben C. Stöver, Sarah Wiechers, Kai F. Müller. JPhyloIO: a Java library for event-based reading and writing of different phylogenetic file formats through a common interface |
| 0 | -- | 0 | Alfredo Iacoangeli, A. Al Khleifat, W. Sproviero, A. Shatunov, A. R. Jones, S. L. Morgan, A. Pittman, R. J. Dobson, S. J. Newhouse, A. Al-Chalabi. DNAscan: personal computer compatible NGS analysis, annotation and visualisation |
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| 0 | -- | 0 | Robin Wellmann. Optimum contribution selection for animal breeding and conservation: the R package optiSel |
| 0 | -- | 0 | Suyan Tian. Identification of monotonically differentially expressed genes for non-small cell lung cancer |
| 0 | -- | 0 | Kaisa Liimatainen, Lauri Kananen, Leena Latonen, Pekka Ruusuvuori. Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks |
| 0 | -- | 0 | Bastien Kovac, Jérôme Fehrenbach, Ludivine Guillaume, Pierre Weiss. FitEllipsoid: a fast supervised ellipsoid segmentation plugin |
| 0 | -- | 0 | Christopher M. Wilson, Kaiqiao Li, Xiaoqing Yu, Pei Fen Kuan, Xuefeng Wang. Multiple-kernel learning for genomic data mining and prediction |
| 0 | -- | 0 | Stefan Hammer, Wei Wang, Sebastian Will, Yann Ponty. Fixed-parameter tractable sampling for RNA design with multiple target structures |
| 0 | -- | 0 | Ying Shen, Yaliang Li, Hai-Tao Zheng, Buzhou Tang, Min Yang 0007. Enhancing ontology-driven diagnostic reasoning with a symptom-dependency-aware Naïve Bayes classifier |
| 0 | -- | 0 | Zhiguo Li, Jiaxing Lin, Alexander B. Sibley, Tracy Truong, Katherina C. Chua, Yu Jiang, Janice M. McCarthy, Deanna L. Kroetz, Andrew S. Allen, Kouros Owzar. Efficient estimation of grouped survival models |
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| 0 | -- | 0 | Wei Chen, Toby Kenney, Joseph P. Bielawski, Hong Gu. Testing adequacy for DNA substitution models |
| 0 | -- | 0 | Wei-li Wang, Zhou Yu, Luis R. Castillo-Menendez, Joseph Sodroski, Youdong Mao. Robustness of signal detection in cryo-electron microscopy via a bi-objective-function approach |
| 0 | -- | 0 | Daniel Domingo-Fernández, Sarah Mubeen, Josep Marín-Llaó, Charles Tapley Hoyt, Martin Hofmann-Apitius. PathMe: merging and exploring mechanistic pathway knowledge |
| 0 | -- | 0 | Yiren Jian, Xiaonan Wang, Jaidi Qiu, Huiwen Wang, Zhichao Liu, Yunjie Zhao, Chen Zeng. DIRECT: RNA contact predictions by integrating structural patterns |
| 0 | -- | 0 | Sergii Domanskyi, Anthony Szedlak, Nathaniel T Hawkins, Jiayin Wang, Giovanni Paternostro, Carlo Piermarocchi. Polled Digital Cell Sorter (p-DCS): Automatic identification of hematological cell types from single cell RNA-sequencing clusters |
| 0 | -- | 0 | Leijie Li, Dongxue Che, Xiaodan Wang, Peng Zhang, Siddiq Ur Rahman, Jianbang Zhao, Jiantao Yu, Shiheng Tao, Hui Lu, Mingzhi Liao. CellSim: a novel software to calculate cell similarity and identify their co-regulation networks |
| 0 | -- | 0 | Markos Antonopoulos, Dimitra D. Dionysiou, Georgios S. Stamatakos, Nikolaos K. Uzunoglu. Publisher Correction to: Three-dimensional tumor growth in time-varying chemical fields: a modeling framework and theoretical study |
| 0 | -- | 0 | Matús Medo, Daniel M. Aebersold, Michaela Medová. ProtRank: bypassing the imputation of missing values in differential expression analysis of proteomic data |
| 0 | -- | 0 | Yun Zhang, Gautam Bandyopadhyay, David J. Topham, Ann R. Falsey, Xing Qiu. Highly efficient hypothesis testing methods for regression-type tests with correlated observations and heterogeneous variance structure |
| 0 | -- | 0 | Roman Hornung, Marvin N. Wright. Block Forests: random forests for blocks of clinical and omics covariate data |
| 0 | -- | 0 | Jon Mitchell Ambler, Shandukani Mulaudzi, Nicola J. Mulder. GenGraph: a python module for the simple generation and manipulation of genome graphs |
| 0 | -- | 0 | Sarah Machado, Vincent Mercier, Nicolas Chiaruttini. LimeSeg: a coarse-grained lipid membrane simulation for 3D image segmentation |
| 0 | -- | 0 | N. Ozlem Ozcan, Arzucan Özgür, Fikret Gürgen. Statistical representation models for mutation information within genomic data |
| 0 | -- | 0 | Tra-My Ngo, Yik-Ying Teo. Genomic prediction of tuberculosis drug-resistance: benchmarking existing databases and prediction algorithms |
| 0 | -- | 0 | Bastien Kovac, Jérôme Fehrenbach, Ludivine Guillaume, Pierre Weiss. FitEllipsoid: a fast supervised ellipsoid segmentation plugin |
| 0 | -- | 0 | Junpeng Zhang, Lin Liu 0003, Taosheng Xu, Yong Xie, Chunwen Zhao, Jiuyong Li, Thuc Duy Le. miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules |
| 0 | -- | 0 | Zhe Wang, Junming Hu, W. Evan Johnson, Joshua D. Campbell. scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data |
| 0 | -- | 0 | Marietta Kokla, Jyrki Virtanen, Marjukka Kolehmainen, Jussi Paananen, Kati Hanhineva. Random forest-based imputation outperforms other methods for imputing LC-MS metabolomics data: a comparative study |
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| 0 | -- | 0 | Sam Henry, Bridget T. McInnes. Indirect association and ranking hypotheses for literature based discovery |
| 0 | -- | 0 | Tobias Zehnder, Philipp Benner, Martin Vingron. Predicting enhancers in mammalian genomes using supervised hidden Markov models |
| 0 | -- | 0 | Arezo Torang, Paraag Gupta, David J. Klinke II. An elastic-net logistic regression approach to generate classifiers and gene signatures for types of immune cells and T helper cell subsets |
| 0 | -- | 0 | Janet Wang, Thomas LaFramboise. CytoConverter: a web-based tool to convert karyotypes to genomic coordinates |
| 0 | -- | 0 | Federico Marini 0002, Harald Binder. pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components |
| 0 | -- | 0 | Asif Zubair, I. Gary Rosen, Sergey V. Nuzhdin, Paul Marjoram. Bayesian model selection for the Drosophila gap gene network |
| 0 | -- | 0 | Franziska Schumann, Eric Blanc, Clemens Messerschmidt, Thomas Blankenstein, Antonia Busse, Dieter Beule. SigsPack, a package for cancer mutational signatures |
| 0 | -- | 0 | Tongle Ma, Yongzhen Pei, Changguo Li, Meixia Zhu. Periodicity and dosage optimization of an RNAi model in eukaryotes cells |
| 0 | -- | 0 | Chuanyan Wu, Rui Gao, Yusen Zhang, Yang De Marinis. PTPD: predicting therapeutic peptides by deep learning and word2vec |
| 0 | -- | 0 | Shintaro Katayama, Tiina Skoog, Cilla Söderhäll, Elisabet Einarsdottir, Kaarel Krjutskov, Juha Kere. Guide for library design and bias correction for large-scale transcriptome studies using highly multiplexed RNAseq methods |
| 0 | -- | 0 | Harald Marx, Joshua J. Coon. MS-Helios: a Circos wrapper to visualize multi-omic datasets |
| 0 | -- | 0 | Kaining Hu, Kai Xu, Jing Wen, Bin Yi, Jinxiong Shen, Chaozhi Ma, Tingdong Fu, Yidan Ouyang, Jinxing Tu. Helitron distribution in Brassicaceae and whole Genome Helitron density as a character for distinguishing plant species |
| 0 | -- | 0 | Stefano Teso, Luca Masera, Michelangelo Diligenti, Andrea Passerini. Combining learning and constraints for genome-wide protein annotation |
| 0 | -- | 0 | Daniel Perez-Gil, Francisco J. Lopez, Joaquín Dopazo, Pablo Marín-García, Augusto Rendon, Ignacio Medina. PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources |
| 0 | -- | 0 | Eric Czech, Bülent Arman Aksoy, Pinar Aksoy, Jeff Hammerbacher. Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging |
| 0 | -- | 0 | Marco Seeland, Michael Rzanny, David Boho, Jana Wäldchen, Patrick Mäder. Image-based classification of plant genus and family for trained and untrained plant species |
| 0 | -- | 0 | Taewoon Joo, Ji-Hye Choi, Ji-Hye Lee, So-Eun Park, Youngsic Jeon, Sae Hoon Jung, Hyun Goo Woo. SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package |
| 0 | -- | 0 | Claus Weinholdt, Henri Wichmann, Johanna Kotrba, David H. Ardell, Matthias Kappler, Alexander W. Eckert, Dirk Vordermark, Ivo Grosse. Prediction of regulatory targets of alternative isoforms of the epidermal growth factor receptor in a glioblastoma cell line |
| 0 | -- | 0 | Yifei Chen. Multiple-level biomedical event trigger recognition with transfer learning |
| 0 | -- | 0 | Yahui Long, Jiawei Luo. WMGHMDA: a novel weighted meta-graph-based model for predicting human microbe-disease association on heterogeneous information network |
| 0 | -- | 0 | Marta B. Lopes, Sandra Casimiro, Susana Vinga. Twiner: correlation-based regularization for identifying common cancer gene signatures |
| 0 | -- | 0 | Jianfeng Cao, Ming-Kin Wong, Zhongying Zhao, Hong Yan 0001. 3DMMS: robust 3D Membrane Morphological Segmentation of C. elegans embryo |
| 0 | -- | 0 | Jaume Bonet, Zander Harteveld, Fabian Sesterhenn, Andreas Scheck, Bruno E. Correia. rstoolbox - a Python library for large-scale analysis of computational protein design data and structural bioinformatics |
| 0 | -- | 0 | Simon Dirmeier, Mario Emmenlauer, Christoph Dehio, Niko Beerenwinkel. PyBDA: a command line tool for automated analysis of big biological data sets |
| 0 | -- | 0 | Jiesi Luo, Wei Chen, Li Xue, Bin Tang. Prediction of activity and specificity of CRISPR-Cpf1 using convolutional deep learning neural networks |
| 0 | -- | 0 | Ziad Al Bkhetan, Justin Zobel, Adam Kowalczyk, Karin Verspoor, Benjamin Goudey. Exploring effective approaches for haplotype block phasing |
| 0 | -- | 0 | Anh Nhat Tran, Alex M. Dussaq, Timothy Kennell Jr, Christopher D. Willey, Anita B. Hjelmeland. HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data |
| 0 | -- | 0 | Yuanjie Liu, Jianhan Lin. A general-purpose signal processing algorithm for biological profiles using only first-order derivative information |
| 0 | -- | 0 | Adam Price, Adrian Caciula, Cheng Guo, Bohyun Lee, Juliet Morrison, Angela Rasmussen, W. Ian Lipkin, Komal Jain. DEvis: an R package for aggregation and visualization of differential expression data |
| 0 | -- | 0 | Thomas W. McCarthy, Hsien-chao Chou, Volker P. Brendel. SRAssembler: Selective Recursive local Assembly of homologous genomic regions |
| 0 | -- | 0 | Hyunwoo Kim, SangJeong Lee, Heejin Park B. Target-small decoy search strategy for false discovery rate estimation |
| 0 | -- | 0 | Aleksandr Igorevich Zhernakov, Alexey Mikhailovich Afonin, Natalia Dmitrievna Gavriliuk, Olga Mikhailovna Moiseeva, Vladimir Aleksandrovich Zhukov. s-dePooler: determination of polymorphism carriers from overlapping DNA pools |
| 0 | -- | 0 | Zhongwang Yu, Yuangen Yao, Haiyou Deng, Ming Yi. ANDIS: an atomic angle- and distance-dependent statistical potential for protein structure quality assessment |
| 0 | -- | 0 | Ali Navid, Yongqin Jiao, Sergio Ernesto Wong, Jennifer Pett-Ridge. System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris |
| 0 | -- | 0 | Pascal David Johann, Natalie Jäger, Stefan M. Pfister, Martin Sill. RF_Purify: a novel tool for comprehensive analysis of tumor-purity in methylation array data based on random forest regression |
| 0 | -- | 0 | Apostolos Dimitromanolakis, Jingxiong Xu, Agnieszka Krol, Laurent Briollais. sim1000G: a user-friendly genetic variant simulator in R for unrelated individuals and family-based designs |
| 0 | -- | 0 | Josefa Díaz Álvarez, Jordi A. Matias-Guiu, María Nieves Cabrera-Martín, José L. Risco-Martín, José L. Ayala. An application of machine learning with feature selection to improve diagnosis and classification of neurodegenerative disorders |
| 0 | -- | 0 | Paul Müller 0003, Shada Abuhattum, Stephanie Möllmert, Elke Ulbricht, Anna V. Taubenberger, Jochen R. Guck. nanite: using machine learning to assess the quality of atomic force microscopy-enabled nano-indentation data |
| 0 | -- | 0 | Jacob R Heldenbrand, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Matthew E. Hudson, Ravishankar K. Iyer, Michael Kalmbach, Katherine I Kendig, Eric W. Klee, Nathan R Mattson, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Liudmila S. Mainzer. Recommendations for performance optimizations when using GATK3.8 and GATK4 |
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| 0 | -- | 0 | Han Yu, Rachael Hageman Blair. Integration of probabilistic regulatory networks into constraint-based models of metabolism with applications to Alzheimer's disease |
| 0 | -- | 0 | Xiong-Hui Zhou, Xin-Yi Chu, Gang Xue, Jiang-Hui Xiong, Hong-Yu Zhang. Identifying cancer prognostic modules by module network analysis |
| 0 | -- | 0 | Marta B. Lopes, Sandra Casimiro, Susana Vinga. Twiner: correlation-based regularization for identifying common cancer gene signatures |
| 0 | -- | 0 | Fan Yang, Yang Liu, Yanbin Wang, Zhijian Yin, Zhen Yang. MIC_Locator: a novel image-based protein subcellular location multi-label prediction model based on multi-scale monogenic signal representation and intensity encoding strategy |
| 0 | -- | 0 | Ana M. Untaroiu, Maureen A. Carey, Jennifer L. Guler, Jason A. Papin. Leveraging the effects of chloroquine on resistant malaria parasites for combination therapies |
| 0 | -- | 0 | Ngaam J. Cheung, Wookyung Yu. Sibe: a computation tool to apply protein sequence statistics to predict folding and design in silico |
| 0 | -- | 0 | Carlos J. Rivera-Rivera, Juan I. Montoya-Burgos. LSX: automated reduction of gene-specific lineage evolutionary rate heterogeneity for multi-gene phylogeny inference |
| 0 | -- | 0 | Hao He, Jiaxiang Zhao, Guiling Sun. Computational prediction of MoRFs based on protein sequences and minimax probability machine |
| 0 | -- | 0 | Yannick Martin, Michel Page, Christophe Blanchet, Hidde de Jong. WellInverter: a web application for the analysis of fluorescent reporter gene data |
| 0 | -- | 0 | Fernando Cruz, Davide Lagoa, João Mendes, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha, Oscar Días. SamPler - a novel method for selecting parameters for gene functional annotation routines |
| 0 | -- | 0 | Brian B. Merritt, Lily S. Cheung. GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes |
| 0 | -- | 0 | Artyom A. Egorov, Ekaterina A. Sakharova, Aleksandra S. Anisimova, Sergey E. Dmitriev, Vadim N. Gladyshev, Ivan V. Kulakovskiy. svist4get: a simple visualization tool for genomic tracks from sequencing experiments |
| 0 | -- | 0 | Amira Al-Aamri, Kamal Taha, Yousof Al-Hammadi, Maher Maalouf, Dirar Homouz. Analyzing a co-occurrence gene-interaction network to identify disease-gene association |
| 0 | -- | 0 | Blythe S. Moreland, Kenji M. Oman, Ralf Bundschuh. A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction |
| 0 | -- | 0 | Sahil D. Shah, Rosemary Braun. GeneSurrounder: network-based identification of disease genes in expression data |
| 0 | -- | 0 | Yanbu Guo, Weihua Li 0006, Bingyi Wang, Huiqing Liu, Dongming Zhou. DeepACLSTM: deep asymmetric convolutional long short-term memory neural models for protein secondary structure prediction |
| 0 | -- | 0 | Sunyoung Kwon, Ho Bae, Jeonghee Jo, Sungroh Yoon. Comprehensive ensemble in QSAR prediction for drug discovery |
| 0 | -- | 0 | Savvas Kinalis, Finn Cilius Nielsen, Ole Winther, Frederik Otzen Bagger. Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data |
| 0 | -- | 0 | Mengmeng Zhu, Michael Gribskov. MiPepid: MicroPeptide identification tool using machine learning |
| 0 | -- | 0 | Valentin Iglesias, Oscar Conchillo-Solé, Cristina Batlle, Salvador Ventura. AMYCO: evaluation of mutational impact on prion-like proteins aggregation propensity |
| 0 | -- | 0 | Hong Qin. Estimating network changes from lifespan measurements using a parsimonious gene network model of cellular aging |
| 0 | -- | 0 | Zengchao Mu, Ting Yu, Enfeng Qi, Juntao Liu, Guojun Li. DCGR: feature extractions from protein sequences based on CGR via remodeling multiple information |
| 0 | -- | 0 | Valerio Licursi, Federica Conte, Giulia Fiscon, Paola Paci. MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis |
| 5 | -- | 0 | Zhen Cui, Ying-Lian Gao, Jin-Xing Liu, Juan Wang 0003, Junliang Shang, Ling-Yun Dai. The computational prediction of drug-disease interactions using the dual-network L2,1-CMF method |
| 6 | -- | 0 | Oyetunji E. Ogundijo, Xiaodong Wang 0001. SeqClone: sequential Monte Carlo based inference of tumor subclones |
| 7 | -- | 0 | Kevin Michael Boehm, Bhavneet Bhinder, Vijay Joseph Raja, Noah Dephoure, Olivier Elemento. Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome |
| 8 | -- | 0 | Indresh Singh, Mehmet Kuscuoglu, Derek M. Harkins, Granger G. Sutton, Derrick E. Fouts, Karen E. Nelson. OMeta: an ontology-based, data-driven metadata tracking system |
| 9 | -- | 0 | Ghanasyam Rallapalli, Pilar Corredor-Moreno, Edward Chalstrey, Martin Page, Daniel MacLean. Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence |
| 10 | -- | 0 | Andre Lamurias, Diana Sousa, Luka A. Clarke, Francisco M. Couto. BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies |
| 11 | -- | 0 | Peng Wang, Yu Zhang, Bei-Qi Wang, Jian-long Li, Yi-xin Wang, Dongdong Pan, Xian-Bo Wu, Wing Kam Fung, Ji-Yuan Zhou. A statistical measure for the skewness of X chromosome inactivation based on case-control design |
| 12 | -- | 0 | Minzhe Zhang, Qiwei Li, Donghyeon Yu, Bo Yao, Wei Guo, Yang Xie, Guanghua Xiao. GeNeCK: a web server for gene network construction and visualization |
| 13 | -- | 0 | Minzhe Zhang, Tao Wang, Rosa Sirianni, Philip W. Shaul, Yang Xie. Identifying genes with tri-modal association with survival and tumor grade in cancer patients |
| 14 | -- | 0 | Johny Ijaq, Girik Malik, Anuj Kumar, Partha Sarathi Das, Narendra Meena, Neeraja Bethi, Vijayaraghava Seshadri Sundararajan, Prashanth Suravajhala. A model to predict the function of hypothetical proteins through a nine-point classification scoring schema |
| 15 | -- | 0 | Takoua Jendoubi, Korbinian Strimmer. A whitening approach to probabilistic canonical correlation analysis for omics data integration |
| 16 | -- | 0 | Rong Zhu, Guangshun Li, Jin-Xing Liu, Ling-Yun Dai, Ying Guo. ACCBN: ant-Colony-clustering-based bipartite network method for predicting long non-coding RNA-protein interactions |
| 17 | -- | 0 | Morteza Chalabi Hajkarim, Vasileios Tsiamis, Lukas Käll, Fabio Vandin, Veit Schwämmle. CoExpresso: assess the quantitative behavior of protein complexes in human cells |
| 18 | -- | 0 | Umaporn Siangphoe, Kellie J. Archer, Nitai D. Mukhopadhyay. Classical and Bayesian random-effects meta-analysis models with sample quality weights in gene expression studies |
| 19 | -- | 0 | Alexandra Zaharia, Bernard Labedan, Christine Froidevaux, Alain Denise. CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts |
| 48 | -- | 0 | Ryan C. Shean, Negar Makhsous, Graham D. Stoddard, Michelle J. Lin, Alexander L. Greninger. VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank |
| 49 | -- | 0 | Meiqi Wu, Yingxi Yang, Hui Wang, Yan Xu. A deep learning method to more accurately recall known lysine acetylation sites |
| 50 | -- | 0 | Patricia Maraver, Rubén Armañanzas, Todd A. Gillette, Giorgio A. Ascoli. PaperBot: open-source web-based search and metadata organization of scientific literature |
| 51 | -- | 0 | Mostafa Hadadian Nejad Yousefi, Maziar Goudarzi, Seyed Abolfazl Motahari. IMOS: improved Meta-aligner and Minimap2 On Spark |
| 52 | -- | 0 | Leander Dony, Fei He 0002, Michael P. H. Stumpf. Parametric and non-parametric gradient matching for network inference: a comparison |
| 53 | -- | 0 | Fang Zhang, Fengzhu Sun, Yihui Luan. Statistical significance approximation for local similarity analysis of dependent time series data |
| 54 | -- | 0 | Marco Moretto, Paolo Sonego, Ana B. Villaseñor-Altamirano, Kristof Engelen. First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_ |
| 55 | -- | 0 | Shadia Mikhael, Cyril R. Pernet. A controlled comparison of thickness, volume and surface areas from multiple cortical parcellation packages |
| 56 | -- | 0 | Nikolay Martyushenko, Eivind Almaas. ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions |
| 58 | -- | 0 | André Voigt, Eivind Almaas. Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks |
| 59 | -- | 0 | Ya-Wei Niu, Guanghui Wang 0002, Gui Ying Yan, Xing Chen. Integrating random walk and binary regression to identify novel miRNA-disease association |
| 60 | -- | 0 | Konstantin Okonechnikov, Serap Erkek, Jan O. Korbel, Stefan M. Pfister, Lukas Chavez. InTAD: chromosome conformation guided analysis of enhancer target genes |
| 61 | -- | 0 | Mohammad Zia, Paul Spurgeon, Adrian Levesque, Thomas R. Furlani, Jianxin Wang. GenESysV: a fast, intuitive and scalable genome exploration open source tool for variants generated from high-throughput sequencing projects |
| 62 | -- | 0 | Xiaozheng Li, Huazhen Wang, Huixin He, Jixiang Du, Jian Chen, Jinzhun Wu. Intelligent diagnosis with Chinese electronic medical records based on convolutional neural networks |
| 63 | -- | 0 | Yao Yao, Zheng Liu, Qi Wei, Stephen A. Ramsey. CERENKOV2: improved detection of functional noncoding SNPs using data-space geometric features |
| 64 | -- | 0 | Farzad Farnoud, Moshe Schwartz 0001, Jehoshua Bruck. Estimation of duplication history under a stochastic model for tandem repeats |
| 65 | -- | 0 | Imane Boudellioua, Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf. DeepPVP: phenotype-based prioritization of causative variants using deep learning |
| 66 | -- | 0 | Nicolas Borisov, Irina Shabalina, Victor Tkachev, Maxim I. Sorokin, Andrew Garazha, Andrey Pulin, Ilya I. Eremin, Anton Buzdin. Shambhala: a platform-agnostic data harmonizer for gene expression data |
| 123 | -- | 0 | Kanwal Naz, Anam Naz, Shifa Tariq Ashraf, Muhammad Rizwan, Jamil Ahmad, Jan Baumbach, Amjad Ali 0001. PanRV: Pangenome-reverse vaccinology approach for identifications of potential vaccine candidates in microbial pangenome |
| 174 | -- | 0 | Hasiba Asma, Marc S. Halfon. Computational enhancer prediction: evaluation and improvements |
| 255 | -- | 0 | Joseph Brown, Aaron R. Phillips, David A. Lewis, Michael-Andres Mans, Yvonne Chang, Robert L. Tanguay, Elena S. Peterson, Katrina M. Waters, Susan C. Tilton. Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration |
| 256 | -- | 0 | Eva Gorrochategui, Joaquim Jaumot, Romà Tauler. ROIMCR: a powerful analysis strategy for LC-MS metabolomic datasets |
| 257 | -- | 0 | Joanna Roder, Benjamin Linstid, Carlos Oliveira. Improving the power of gene set enrichment analyses |
| 451 | -- | 0 | Florian Martin 0002, Sylvain Gubian, Marja Talikka, Julia Hoeng, Manuel C. Peitsch. NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks |
| 507 | -- | 0 | Emile P. Chen, Roy S. Song, Xueer Chen. Mathematical model of hypoxia and tumor signaling interplay reveals the importance of hypoxia and cell-to-cell variability in tumor growth inhibition |
| 508 | -- | 0 | S. Ha, Elena S. Dimitrova, S. Hoops, Doaa Altarawy, Mitra Ansariola, D. Deb, Jane Glazebrook, R. Hillmer, Hossameldin Shahin, Fumiaki Katagiri, J. McDowell, Molly Megraw, J. Setubal, B. M. Tyler, Reinhard C. Laubenbacher. PlantSimLab - a modeling and simulation web tool for plant biologists |
| 619 | -- | 0 | Olalekan Agbolade, Azree Nazri, Razali Yaakob, Abdul Azim Ghani, Yoke Kqueen Cheah. 3-Dimensional facial expression recognition in human using multi-points warping |
| 620 | -- | 0 | Menghan Wang, Tianxin Yu, Jinpeng Liu, Li Chen, Arnold J. Stromberg, John L. Villano, Susanne M. Arnold, Chunming Liu, Chi Wang. A probabilistic method for leveraging functional annotations to enhance estimation of the temporal order of pathway mutations during carcinogenesis |
| 621 | -- | 0 | Hatice Akarsu, Lisandra Aguilar-Bultet, Laurent Falquet. deltaRpkm: an R package for a rapid detection of differential gene presence between related bacterial genomes |
| 624 | -- | 0 | Dengju Yao, Xiaojuan Zhan, Chee Keong Kwoh. An improved random forest-based computational model for predicting novel miRNA-disease associations |
| 625 | -- | 0 | Vincent Branders, Pierre Schaus, Pierre Dupont. Identifying gene-specific subgroups: an alternative to biclustering |
| 626 | -- | 0 | Jiechen Li, Xueyong Li, Xiang Feng, Bing Wang, Bihai Zhao, Lei Wang. A novel target convergence set based random walk with restart for prediction of potential LncRNA-disease associations |
| 627 | -- | 0 | Amarin Jettakul, Duangdao Wichadakul, Peerapon Vateekul. Relation extraction between bacteria and biotopes from biomedical texts with attention mechanisms and domain-specific contextual representations |
| 629 | -- | 0 | Alexander M. Sevy, Cinque S. Soto, Robin G. Bombardi, Jens Meiler, James E. Crowe Jr.. Immune repertoire fingerprinting by principal component analysis reveals shared features in subject groups with common exposures |
| 632 | -- | 0 | Liyuan Guo, Wei Lin, Yidan Zhang, Wenhan Li, Jing Wang. BEST: a web server for brain expression Spatio-temporal pattern analysis |
| 643 | -- | 0 | Joachim Ludwig, Christian Höner zu Siederdissen, Zishu Liu, Peter F. Stadler, Susann Müller. flowEMMi: an automated model-based clustering tool for microbial cytometric data |
| 645 | -- | 0 | Hui Liu, Wenhao Zhang, Lixia Nie, Xiancheng Ding, Judong Luo, Ling Zou 0002. Predicting effective drug combinations using gradient tree boosting based on features extracted from drug-protein heterogeneous network |
| 649 | -- | 0 | Benjamin Ulfenborg. Vertical and horizontal integration of multi-omics data with miodin |
| 650 | -- | 0 | Elham Khodayari Moez, Morteza Hajihosseini, Jeffrey L. Andrews, Irina Dinu. Longitudinal linear combination test for gene set analysis |
| 653 | -- | 0 | Michael Mayers, Tong Shu Li, Núria Queralt-Rosinach, Andrew I. Su. Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network |
| 654 | -- | 0 | Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo. Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage |
| 655 | -- | 0 | Martin Palazzo, Pierre Beauseroy, Patricio Yankilevich. A pan-cancer somatic mutation embedding using autoencoders |
| 663 | -- | 0 | Iñigo Prada-Luengo, Anders Krogh, Lasse Maretty, Birgitte Regenberg. Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads |
| 664 | -- | 0 | Christoph Kämpf, Michael Specht, Alexander Scholz, Sven-Holger Puppel, Gero Doose, Kristin Reiche, Jana Schor, Jörg Hackermüller. uap: reproducible and robust HTS data analysis |
| 665 | -- | 0 | Lei Cai, Yufeng Wu, Jingyang Gao. DeepSV: accurate calling of genomic deletions from high-throughput sequencing data using deep convolutional neural network |
| 666 | -- | 0 | Guangyao Zhou, Jackson Loper, Stuart Geman. Base-pair ambiguity and the kinetics of RNA folding |
| 709 | -- | 0 | Javier De Velasco Oriol, Edgar E. Vallejo-Clemente, Karol Estrada, José Gerardo Taméz Peña, Alzheimer's Disease Neuroimaging Initiative. Benchmarking machine learning models for late-onset alzheimer's disease prediction from genomic data |
| 710 | -- | 0 | Chandler Gatenbee, Ryan O. Schenck, Rafael R. Bravo, Alexander R. A. Anderson. EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data |
| 711 | -- | 0 | Jiajin Chen, Ruyang Zhang, Xuesi Dong, Lijuan Lin, Ying Zhu, Jieyu He, David C. Christiani, Yongyue Wei, Feng Chen. shinyBN: an online application for interactive Bayesian network inference and visualization |
| 722 | -- | 0 | Jacob R Heldenbrand, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Matthew E. Hudson, Ravishankar K. Iyer, Michael Kalmbach, Katherine I Kendig, Eric W. Klee, Nathan R Mattson, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Liudmila S. Mainzer. Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4 |
| 723 | -- | 0 | Michael Heinzinger, Ahmed Elnaggar, Yu Wang, Christian Dallago, Dmitrii Nechaev, Florian Matthes, Burkhard Rost. Modeling aspects of the language of life through transfer-learning protein sequences |
| 724 | -- | 0 | Chunhui Liu, Xingyu Fan, Zhizhi Guo, Zhongjun Mo, Eric I-Chao Chang, Yan Xu 0001. Wound area measurement with 3D transformation and smartphone images |
| 725 | -- | 0 | Ricardo Ramirez, Allen Michael Herrera, Joshua Ramirez, Chunjiang Qian, David W. Melton, Paula K. Shireman, Yu-Fang Jin. Deriving a Boolean dynamics to reveal macrophage activation with in vitro temporal cytokine expression profiles |
| 726 | -- | 0 | Remzi Celebi, Hüseyin Uyar, Erkan Yasar, Özgür Gümüs, Oguz Dikenelli, Michel Dumontier. Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings |
| 727 | -- | 0 | Maria Littmann, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén, Burkhard Rost. Correction to: Detailed prediction of protein sub-nuclear localization |
| 728 | -- | 0 | Kohei Amano, Tsubasa Matsumoto, Kenichi Tanaka, Kimito Funatsu, Masaaki Kotera. Metabolic disassembler for understanding and predicting the biosynthetic units of natural products |
| 729 | -- | 0 | Charith B. Karunarathna, Jinko Graham. perfectphyloR: An R package for reconstructing perfect phylogenies |
| 730 | -- | 0 | Xin Su, Jing Xu, Yanbin Yin, Xiongwen Quan, Han Zhang. Antimicrobial peptide identification using multi-scale convolutional network |
| 731 | -- | 0 | Dan Jiang, Cong Xin, Jinhua Ye, Yingbo Yuan, Ming Fang. ICGRM: integrative construction of genomic relationship matrix combining multiple genomic regions for big dataset |
| 732 | -- | 0 | Dvir Netanely, Neta Stern, Itay Laufer, Ron Shamir. PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets |
| 733 | -- | 0 | Barbara Rita Barricelli, Elena Casiraghi, Jessica Gliozzo, Veronica Huber, Biagio Eugenio Leone, Alessandro Rizzi, Barbara Vergani. ki67 nuclei detection and ki67-index estimation: a novel automatic approach based on human vision modeling |
| 734 | -- | 0 | A. B. M. Shamim Ul Hasan, Hiroyuki Kurata, Sebastian Pechmann. Improvement of the memory function of a mutual repression network in a stochastic environment by negative autoregulation |
| 735 | -- | 0 | Hyejin Cho, Hyunju Lee. Biomedical named entity recognition using deep neural networks with contextual information |
| 736 | -- | 0 | Ranjan Kumar Barman, Anirban Mukhopadhyay 0001, Ujjwal Maulik, Santasabuj Das. Identification of infectious disease-associated host genes using machine learning techniques |
| 737 | -- | 0 | Alexandra Poos, Theresa Kordaß, Amol Kolte, Volker Ast, Marcus Oswald, Karsten Rippe, Rainer König. Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach |
| 738 | -- | 0 | Vincent Demolombe, Alexandre G. de Brevern, Franck Molina, Géraldine Lavigne, Claude Granier, Violaine Moreau. Benchmarking the PEPOP methods for mimicking discontinuous epitopes |
| 739 | -- | 0 | Emanuel Maldonado, Agostinho Antunes. LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation |
| 740 | -- | 0 | Rudi Alberts, Jinyu Chen, Louxin Zhang. ZDOG: zooming in on dominating genes with mutations in cancer pathways |
| 741 | -- | 0 | Judit Kumuthini, Lyndon Zass, Sumir Panji, Samson P. Salifu, Jonathan K. Kayondo, Victoria Nembaware, Mamana Mbiyavanga, Ajayi Olabode, Ali Kishk, Gordon Wells, Nicola J. Mulder. The H3ABioNet helpdesk: an online bioinformatics resource, enhancing Africa's capacity for genomics research |
| 742 | -- | 0 | Daniel Lichtblau. Alignment-free genomic sequence comparison using FCGR and signal processing |
| 743 | -- | 0 | Jérémy Amand, Tobias Fehlmann, Christina Backes, Andreas Keller. DynaVenn: web-based computation of the most significant overlap between ordered sets |