Peichen Pan - researchr alias

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Viewing Publication 1 - 48 from 48

2025

Deep Learning-Driven Insights into Enzyme-Substrate Interaction DiscoveryWenjia Qian, Xiaorui Wang, Yuansheng Huang, Yu Kang 0002, Peichen Pan, Chang-Yu Hsieh, Tingjun Hou. jcisd, 65(1):187-200, 2025. [doi]

ADMET evaluation in drug discovery: 21. Application and industrial validation of machine learning algorithms for Caco-2 permeability predictionDong Wang, Jieyu Jin, Guqin Shi, Jingxiao Bao, Zheng Wang, Shimeng Li, Peichen Pan, Dan Li 0013, Yu Kang 0002, Tingjun Hou. jcheminf, 17(1):3, December 2025. [doi]

2024

A general model for predicting enzyme functions based on enzymatic reactionsWenjia Qian, Xiaorui Wang, Yu Kang 0002, Peichen Pan, Tingjun Hou, Chang-Yu Hsieh. jcheminf, 16(1):38, December 2024. [doi]

Structure-based virtual screening of novel USP5 inhibitors targeting the zinc finger ubiquitin-binding domainTianhao Wang, Jianbo Tong, Xing Zhang, Zhe Wang 0041, Lei Xu 0035, Peichen Pan, Tingjun Hou. cbm, 174:108397, 2024. [doi]

Genetic Algorithm-Based Receptor Ligand: A Genetic Algorithm-Guided Generative Model to Boost the Novelty and Drug-Likeness of Molecules in a Sampling Chemical SpaceMingyang Wang, Zhengjian Wu, Jike Wang, Gaoqi Weng, Yu Kang 0002, Peichen Pan, Dan Li 0013, Yafeng Deng, Xiaojun Yao, Zhitong Bing, Chang-Yu Hsieh, Tingjun Hou. jcisd, 64(4):1213-1228, February 2024. [doi]

In-depth theoretical modeling to explore the mechanism of TPX-0131 overcoming lorlatinib resistance to ALKL1196M/G1202R mutationXing Zhang, Jianbo Tong, Tianhao Wang, Zhe Wang 0041, Shukai Gu, Lei Xu 0035, Tingjun Hou, Peichen Pan. cbm, 183:109265, 2024. [doi]

Dissecting the role of ALK double mutations in drug resistance to lorlatinib with in-depth theoretical modeling and analysisXing Zhang, Jianbo Tong, Tianhao Wang, Tianyue Wang, Lei Xu 0035, Zhe Wang 0041, Tingjun Hou, Peichen Pan. cbm, 169:107815, February 2024. [doi]

2023

Small-Molecule Conformer Generators: Evaluation of Traditional Methods and AI Models on High-Quality Data SetsZhe Wang 0041, Haiyang Zhong, Jintu Zhang, Peichen Pan, Dong Wang, Huanxiang Liu, Xiaojun Yao, Tingjun Hou, Yu Kang 0002. jcisd, 63(21):6525-6536, November 2023. [doi]

ML-PLIC: a web platform for characterizing protein-ligand interactions and developing machine learning-based scoring functionsXujun Zhang, Chao Shen, Tianyue Wang, Yafeng Deng, Yu Kang 0002, Dan Li 0013, Tingjun Hou, Peichen Pan. bib, 24(5), September 2023. [doi]

TB-IECS: an accurate machine learning-based scoring function for virtual screeningXujun Zhang, Chao Shen 0008, Dejun Jiang 0002, Jintu Zhang, Qing Ye, Lei Xu 0035, Tingjun Hou, Peichen Pan, Yu Kang 0002. jcheminf, 15(1):63, December 2023. [doi]

Learning on topological surface and geometric structure for 3D molecular generationOdin Zhang, Tianyue Wang, Gaoqi Weng, Dejun Jiang 0002, Ning Wang, Xiaorui Wang, Huifeng Zhao, Jialu Wu, Ercheng Wang, Guangyong Chen, Yafeng Deng, Peichen Pan, Yu Kang 0002, Chang-Yu Hsieh, Tingjun Hou. ncs, 3(10):849-859, 2023. [doi]

2022

2019

Caffeine: Toward Uniformed Representation and Acceleration for Deep Convolutional Neural NetworksChen Zhang 0001, Guangyu Sun, Zhenman Fang, Peipei Zhou, Peichen Pan, Jason Cong. tcad, 38(11):2072-2085, 2019. [doi]

2017

Comparative analyses of structural features and scaffold diversity for purchasable compound librariesJun Shang, Huiyong Sun, Hui Liu, Fu Chen, sheng Tian, Peichen Pan, Dan Li, Dexin Kong, Tingjun Hou. jcheminf, 9(1), 2017. [doi]

2016

2015

Identification and Preliminary SAR Analysis of Novel Type-I Inhibitors of TIE-2 via Structure-Based Virtual Screening and Biological Evaluation in in vitro ModelsPeichen Pan, sheng Tian, Huiyong Sun, Xiaotian Kong, Wenfang Zhou, Dan Li, Youyong Li, Tingjun Hou. jcisd, 55(12):2693-2704, 2015. [doi]

2014

Assessing an Ensemble Docking-Based Virtual Screening Strategy for Kinase Targets by Considering Protein Flexibilitysheng Tian, Huiyong Sun, Peichen Pan, Dan Li, Xuechu Zhen, Youyong Li, Tingjun Hou. jcisd, 54(10):2664-2679, 2014. [doi]

2013

Molecular Principle of Topotecan Resistance by Topoisomerase I Mutations through Molecular Modeling ApproachesPeichen Pan, Youyong Li, Huidong Yu, Huiyong Sun, Tingjun Hou. jcisd, 53(4):997-1006, 2013. [doi]

Development and Evaluation of an Integrated Virtual Screening Strategy by Combining Molecular Docking and Pharmacophore Searching Based on Multiple Protein Structuressheng Tian, Huiyong Sun, Youyong Li, Peichen Pan, Dan Li, Tingjun Hou. jcisd, 53(10):2743-2756, 2013. [doi]

2006

FPGA Design Automation: A SurveyDeming Chen, Jason Cong, Peichen Pan. fteda, 1(3), 2006. [doi]

2002

Monotone bipartitioning problem in a planar point set with applications to VLSIParthasarathi Dasgupta, Peichen Pan, Subhas C. Nandy, Bhargab B. Bhattacharya. todaes, 7(2):231-248, 2002. [doi]

1999

Optimal Retiming for Initial State ComputationPeichen Pan, Guohua Chen. vlsid 1999: 366-371 [doi]

Performance-Driven Integration of Retiming and ResynthesisPeichen Pan. dac 1999: 243-246 [doi]

Partial Scan with Preselected Scan SignalsPeichen Pan, C. L. Liu. TC, 48(9):1000-1005, 1999.

The Retiming of Single-Phase Clocked Circuits Containing Level-Sensitive LatchesPrashant Saxena, Peichen Pan, C. L. Liu. vlsid 1999: 402-407 [doi]

1998

1997

Optimal Clock Period Clustering for Sequential Circuits with RetimingArvind K. Karandikar, Peichen Pan, C. L. Liu. iccd 1997: 122-127

Continuous Retiming: Algorithms and ApplicationsPeichen Pan. iccd 1997: 116-121

Optimal Graph Constraint Reduction for Symbolic Layout CompactionPeichen Pan, Sai-keung Dong, C. L. Liu. algorithmica, 18(4):560-574, 1997.

1996

1995

Partial Scan with Pre-selected Scan SignalsPeichen Pan, C. L. Liu. dac 1995: 189-194 [doi]

Area minimization for floorplansPeichen Pan, C. L. Liu. tcad, 14(1):123-132, 1995. [doi]

1994

Area minimization for hierarchical floorplansPeichen Pan, Weiping Shi, C. L. Liu. iccad 1994: 436-440 [doi]

1993

Optimal Graph Constraint Reduction for Symbolic Layout CompactionPeichen Pan, Sai-keung Dong, C. L. Liu. dac 1993: 401-406 [doi]

1992

Area minimization for general floorplansPeichen Pan, C. L. Liu. iccad 1992: 606-609 [doi]

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