| 0 | -- | 0 | Yi Zheng, Shan Wu, Yang Bai, Honghe Sun, Chen Jiao, Shaogui Guo, Kun Zhao, Jose M. Blanca, Zhonghua Zhang, Sanwen Huang, Yong Xu, Yiqun Weng, Michael Mazourek, Umesh K. Reddy, Kaori Ando, James D. McCreight, Arthur A. Schaffer, Joseph Burger, Yaakov Tadmor, Nurit Katzir, Xuemei Tang, Yang Liu, James J. Giovannoni, Kai-Shu Ling, W. Patrick Wechter, Amnon Levi, Jordi Garcia-Mas, Rebecca Grumet, Zhangjun Fei. Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops |
| 0 | -- | 0 | I-Min A. Chen, Ken Chu, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Marcel Huntemann, Neha Varghese, James R. White, Rekha Seshadri, Tatyana Smirnova, Edward Kirton, Sean P. Jungbluth, Tanja Woyke, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides. IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes |
| 0 | -- | 0 | R. Henrik Nilsson, Karl-Henrik Larsson, Andy F. S. Taylor, Johan Bengtsson-Palme, Thomas S. Jeppesen, Dmitry Schigel, Peter Kennedy, Kathryn Picard, Frank Oliver Glöckner, Leho Tedersoo, Irja Saar, Urmas Kõljalg, Kessy Abarenkov. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications |
| 0 | -- | 0 | Yuichi Kodama, Jun Mashima, Takehide Kosuge, Osamu Ogasawara. DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data |
| 0 | -- | 0 | Carol J. Bult, Judith A. Blake, Cynthia L. Smith, James A. Kadin, Joel E. Richardson, The Mouse Genome Database Group. Mouse Genome Database (MGD) 2019 |
| 0 | -- | 0 | Zhan Tong, Qinghua Cui, Juan Wang, Yuan Zhou. TransmiR v2.0: an updated transcription factor-microRNA regulation database |
| 0 | -- | 0 | Rayees Rahman, Peter Man-Un Ung, Avner Schlessinger. KinaMetrix: a web resource to investigate kinase conformations and inhibitor space |
| 0 | -- | 0 | Jhih-Hua Jhong, Yu-Hsiang Chi, Wen-Chi Li, Tsai-Hsuan Lin, Kai-Yao Huang, Tzong-Yi Lee. dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data |
| 0 | -- | 0 | Yumin Zhu, Gang Xu, Yu-Cheng T. Yang, Zhiyu Xu, Xinduo Chen, Binbin Shi, Daoxin Xie, Zhi John Lu, Pengyuan Wang. POSTAR2: deciphering the post-transcriptional regulatory logics |
| 0 | -- | 0 | Lina Ma, Jiabao Cao, Lin Liu, Qiang Du, Zhao Li, Dong Zou, Vladimir B. Bajic, Zhang Zhang 0002. LncBook: a curated knowledgebase of human long non-coding RNAs |
| 0 | -- | 0 | Pora Kim, Xiaobo Zhou. FusionGDB: fusion gene annotation DataBase |
| 0 | -- | 0 | Ahmed Mohamed, Anup Shah, David Chen, Michelle M. Hill. RaftProt V2: understanding membrane microdomain function through lipid raft proteomes |
| 0 | -- | 0 | Xavier Meyer, Linda Dib, Nicolas Salamin. CoevDB: a database of intramolecular coevolution among protein-coding genes of the bony vertebrates |
| 0 | -- | 0 | Klaus Hornischer, Ariane Khaledi, Sarah Pohl, Monika Schniederjans, Lorena Pezoldt, Fiordiligie Casilag, Uthayakumar Muthukumarasamy, Sebastian Bruchmann, Janne Thöming, Adrian Kordes, Susanne Häussler. BACTOME - a reference database to explore the sequence- and gene expression-variation landscape of Pseudomonas aeruginosa clinical isolates |
| 0 | -- | 0 | Diogo M. Ribeiro, Galadriel Briere, Benoit Bely, Lionel Spinelli, Christine Brun. MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins |
| 0 | -- | 0 | Jing Wang, Xizhen Dai, Lynne D. Berry, Joy D. Cogan, Qi Liu, Yu Shyr. HACER: an atlas of human active enhancers to interpret regulatory variants |
| 0 | -- | 0 | Thierry Lombardot, Anne Morgat, Kristian B. Axelsen, Lucila Aimo, Nevila Hyka-Nouspikel, Anne Niknejad, Alex Ignatchenko, Ioannis Xenarios, Elisabeth Coudert, Nicole Redaschi, Alan Bridge. Updates in Rhea: SPARQLing biochemical reaction data |
| 0 | -- | 0 | Rongbin Zheng, Changxin Wan, Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Chen-Hao Chen, Myles Brown, Xiaoyan Zhang, Clifford A. Meyer, Xiaole Shirley Liu. Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis |
| 0 | -- | 0 | Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W. Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik. Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets |
| 0 | -- | 0 | Ian Sillitoe, Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, Paul Ashford, Adeyelu Tolulope, Harry M. Scholes, Ilya Senatorov, Andra Bujan, Fatima Ceballos Rodriguez-Conde, Benjamin Dowling, Janet M. Thornton, Christine A. Orengo. CATH: expanding the horizons of structure-based functional annotations for genome sequences |
| 0 | -- | 0 | Alberto Santos-Zavaleta, Heladia Salgado, Socorro Gama-Castro, Mishael Sánchez-Pérez, Laura Gómez-Romero, Daniela Ledezma-Tejeida, Jair Santiago García-Sotelo, Kevin Alquicira-Hernández, Luis Muñiz-Rascado, Pablo Peña-Loredo, Cecilia Ishida-Gutiérrez, David A. Velázquez-Ramírez, Victor del Moral-Chávez, César Bonavides-Martínez, Carlos-Francisco Méndez-Cruz, James E. Galagan, Julio Collado-Vides. RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 |
| 0 | -- | 0 | Teng Liu, Qiong Zhang, Jiankun Zhang, Chao Li, Ya-Ru Miao, Qian Lei, Qiubai Li, An-Yuan Guo. EVmiRNA: a database of miRNA profiling in extracellular vesicles |
| 0 | -- | 0 | Stephen J. Kiniry, Patrick B. F. O'Connor, Audrey M. Michel, Pavel V. Baranov. Trips-Viz: a transcriptome browser for exploring Ribo-Seq data |
| 0 | -- | 0 | Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. miRBase: from microRNA sequences to function |
| 0 | -- | 0 | Pieter-Jan Volders, Jasper Anckaert, Kenneth Verheggen, Justine Nuytens, Lennart Martens, Pieter Mestdagh, Jo Vandesompele. LNCipedia 5: towards a reference set of human long non-coding RNAs |
| 0 | -- | 0 | Lorenz Christian Reimer, Anna Vetcininova, Joaquim Sardà Carbasse, Carola Söhngen, Dorothea Gleim, Christian Ebeling, Jörg Overmann. BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis |
| 0 | -- | 0 | Annalisa Buniello, Jacqueline A. L. MacArthur, Maria Cerezo, Laura W. Harris, James D. Hayhurst, Cinzia Malangone, Aoife McMahon, Joannella Morales, Edward Mountjoy, Elliot Sollis, Daniel Suveges, Olga Vrousgou, Patricia L. Whetzel, M. Ridwan Amode, Jose A. Guillen, Harpreet Singh Riat, Stephen J. Trevanion, Peggy Hall, Heather Junkins, Paul Flicek, Tony Burdett, Lucia A. Hindorff, Fiona Cunningham, Helen E. Parkinson. The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019 |
| 0 | -- | 0 | Xinxin Zhang, Yujia Lan, Jinyuan Xu, Fei Quan, Erjie Zhao, Chunyu Deng, Tao Luo, Liwen Xu, Gaoming Liao, Min Yan, Yanyan Ping, Feng Li, Aiai Shi, Jing Bai, Tingting Zhao, Xia Li 0004, Yun Xiao 0001. CellMarker: a manually curated resource of cell markers in human and mouse |
| 0 | -- | 0 | Michelle G. Giglio, Rebecca Tauber, Suvarna Nadendla, James B. Munro, Dustin Olley, Shoshannah Ball, Elvira Mitraka, Lynn M. Schriml, Pascale Gaudet, Elizabeth T. Hobbs, Ivan Erill, Deborah A. Siegele, James C. Hu, Chris Mungall, Marcus C. Chibucos. ECO, the Evidence & Conclusion Ontology: community standard for evidence information |
| 0 | -- | 0 | Mengwei Li, Dong Zou, Zhaohua Li, Ran Gao, Jian Sang, Yuansheng Zhang, Rujiao Li, Lin Xia, Tao Zhang, Guangyi Niu, Yiming Bao, Zhang Zhang 0002. EWAS Atlas: a curated knowledgebase of epigenome-wide association studies |
| 0 | -- | 0 | Yong Jiang, Fengcui Qian, Xuefeng Bai, Yuejuan Liu, Qiuyu Wang, Bo Ai, Xiaole Han, Shanshan Shi, Jian Zhang, Xuecang Li, Zhidong Tang, Qi Pan, Yuezhu Wang, Fan Wang, Chunquan Li. SEdb: a comprehensive human super-enhancer database |
| 0 | -- | 0 | Hai-Yu Xu, Yan-Qiong Zhang, Zhen-Ming Liu, Tong Chen, Chuan-Yu Lv, Shi-Huan Tang, Xiao-bo Zhang, Wei Zhang, Zhi-Yong Li, Rong-Rong Zhou, Hong-Jun Yang, Xiu-Jie Wang, Lu-Qi Huang. ETCM: an encyclopaedia of traditional Chinese medicine |
| 0 | -- | 0 | Oleg Ursu, Jayme Holmes, Cristian Bologa, Jeremy J. Yang, Stephen L. Mathias, Vasileios Stathias, Dac-Trung Nguyen, Stephan C. Schürer, Tudor I. Oprea. DrugCentral 2018: an update |
| 0 | -- | 0 | Ying Yu, Yunjin Wang, Zhaojie Xia, Xiangyu Zhang, Kailiang Jin, Jingcheng Yang, Luyao Ren, Zheng Zhou, Dong Yu, Tao Qing, Chengdong Zhang, Li Jin, Yuanting Zheng, Li Guo 0009, Leming Shi. PreMedKB: an integrated precision medicine knowledgebase for interpreting relationships between diseases, genes, variants and drugs |
| 0 | -- | 0 | Xiaosong Huang, Laurent-Philippe Albou, Tremayne Mushayahama, Anushya Muruganujan, Haiming Tang, Paul D. Thomas. Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life |
| 0 | -- | 0 | Joanna S. Amberger, Carol A. Bocchini, Alan F. Scott, Ada Hamosh. OMIM.org: leveraging knowledge across phenotype-gene relationships |
| 0 | -- | 0 | Thomas Duigou, Melchior du Lac, Pablo Carbonell, Jean-Loup Faulon. RetroRules: a database of reaction rules for engineering biology |
| 0 | -- | 0 | Elizabeth A. Coker, Costas Mitsopoulos, Joseph E. Tym, Angeliki Komianou, Christos Kannas, Patrizio Di Micco, Eloy D. Villasclaras-Fernández, Bugra Ozer, Albert A. Antolin, Paul Workman, Bissan Al-Lazikani. canSAR: update to the cancer translational research and drug discovery knowledgebase |
| 0 | -- | 0 | Roberto Preste, Ornella Vitale, Rosanna Clima, Giuseppe Gasparre, Marcella Attimonelli. HmtVar: a new resource for human mitochondrial variations and pathogenicity data |
| 0 | -- | 0 | Jesús Murga-Moreno, Marta Coronado-Zamora, Alejandra Bodelón, Antonio Barbadilla, Sònia Casillas. PopHumanScan: the online catalog of human genome adaptation |
| 0 | -- | 0 | Jarny Choi, Tracey M. Baldwin, Mae Wong, Jessica E. Bolden, Kirsten A. Fairfax, Erin C. Lucas, Rebecca Cole, Christine Biben, Clare Morgan, Kerry A. Ramsay, Ashley P. Ng, Maria Kauppi, Lynn M. Corcoran, Wei Shi, Nick Wilson, Michael J. Wilson, Warren S. Alexander, Douglas J. Hilton, Carolyn A. de Graaf. Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans |
| 0 | -- | 0 | Hui Hu, Ya-Ru Miao, Long-Hao Jia, Qing-Yang Yu, Qiong Zhang, An-Yuan Guo. AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors |
| 0 | -- | 0 | Ricky Wai Tak Leung, Xiaosen Jiang, Ka Hou Chu, Jing Qin. ENPD - A Database of Eukaryotic Nucleic Acid Binding Proteins: Linking Gene Regulations to Proteins |
| 0 | -- | 0 | Meng-Wei Shi, Na-An Zhang, Chuan-Ping Shi, Chun-Jie Liu, Zhi-Hui Luo, Dan-Yang Wang, An-Yuan Guo, Zhen-Xia Chen. SAGD: a comprehensive sex-associated gene database from transcriptomes |
| 0 | -- | 0 | Max Kotlyar, Chiara Pastrello, Zara Malik, Igor Jurisica. IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species |
| 0 | -- | 0 | Jing Gong, Hao Wan, Shufang Mei, Hang Ruan, Zhao Zhang, Chun-Jie Liu, An-Yuan Guo, Lixia Diao, Xiaoping Miao, Leng Han. Pancan-meQTL: a database to systematically evaluate the effects of genetic variants on methylation in human cancer |
| 0 | -- | 0 | Yang Wu, Feilong Zhang, Kuo Yang, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Hairuo Hu, Kuo Gao, Wei Wang, Xuezhong Zhou, Yi Zhao, Jianxin Chen. SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping |
| 0 | -- | 0 | Wen Chen, Guoqiang Zhang, Jing Li, Xuan Zhang, Shulan Huang, Shuanglin Xiang, Xiang Hu, Changning Liu. CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs |
| 0 | -- | 0 | Meng Liu, Xiaobin Li, Yingzhou Xie, Dexi Bi, Jingyong Sun, Jun Li, Cui Tai, Zixin Deng, Hong-Yu Ou. ICEberg 2.0: an updated database of bacterial integrative and conjugative elements |
| 0 | -- | 0 | Supratim Mukherjee, Dimitri Stamatis, Jon Bertsch, Galina Ovchinnikova, Hema Y. Katta, Alejandro Mojica, I-Min A. Chen, Nikos Kyrpides, T. B. K. Reddy. Genomes OnLine database (GOLD) v.7: updates and new features |
| 0 | -- | 0 | Birgit H. M. Meldal, Hema Bye-A-Jee, Lukás Gajdos, Zuzana Hammerová, Aneta Horácková, Filip Melicher, Livia Perfetto, Daniel Pokorný, Milagros Rodriguez-Lopez, Alzbeta Türková, Edith D. Wong, Zengyan Xie, Elisabeth Barrera Casanova, Noemi del-Toro, Maximilian Koch, Pablo Porras, Henning Hermjakob, Sandra E. Orchard. Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes |
| 0 | -- | 0 | Stefan Kurtenbach, Rohit Reddy, J. William Harbour. ChIPprimersDB: a public repository of verified qPCR primers for chromatin immunoprecipitation (ChIP) |
| 0 | -- | 0 | Anthony C. Smith, Alan J. Robinson. MitoMiner v4.0: an updated database of mitochondrial localization evidence, phenotypes and diseases |
| 0 | -- | 0 | Mélanie Courtot, Luca Cherubin, Adam Faulconbridge, Daniel Vaughan, Matthew Green, David Richardson, Peter W. Harrison, Patricia L. Whetzel, Helen E. Parkinson, Tony Burdett. BioSamples database: an updated sample metadata hub |
| 0 | -- | 0 | Olivier Clerc, Madeline Deniaud, Sylvain D. Vallet, Alexandra Naba, Alain Rivet, Serge Pérez, Nicolas Thierry-Mieg, Sylvie Ricard-Blum. MatrixDB: integration of new data with a focus on glycosaminoglycan interactions |
| 0 | -- | 0 | Edoardo Sarti, Antoniya A. Aleksandrova, Srujan K. Ganta, Amarendra S. Yavatkar, Lucy R. Forrest. EncoMPASS: an online database for analyzing structure and symmetry in membrane proteins |
| 0 | -- | 0 | Jie Ma, Tao Chen 0005, Songfeng Wu, Chunyuan Yang, Mingze Bai, Kunxian Shu, Kenli Li, Guoqing Zhang, Zhong Jin, Fuchu He, Henning Hermjakob, Yunping Zhu. iProX: an integrated proteome resource |
| 0 | -- | 0 | Sohyun Hwang, Chan Yeong Kim, Sunmo Yang, Eiru Kim, G. Traver Hart, Edward M. Marcotte, Insuk Lee. HumanNet v2: human gene networks for disease research |
| 0 | -- | 0 | Patrick V. Phaneuf, Dennis Gosting, Bernhard O. Palsson, Adam M. Feist. ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation |
| 0 | -- | 0 | Jarny Choi, Chris M. Pacheco, Rowland Mosbergen, Othmar Korn, Tyrone Chen, Isha Nagpal, Steve Englart, Paul W. Angel, Christine A. Wells. Stemformatics: visualize and download curated stem cell data |
| 0 | -- | 0 | Mohashin Pathan, Pamali Fonseka, Sai V. Chitti, Taeyoung Kang, Rahul Sanwlani, Jan Van Deun, An Hendrix, Suresh Mathivanan. Vesiclepedia 2019: a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles |
| 0 | -- | 0 | Zhi-Liang Hu, Carissa A. Park, James M. Reecy. Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB |
| 0 | -- | 0 | Arun Prasad Pandurangan, Jonathan Stahlhacke, Matt E. Oates, Ben Smithers, Julian Gough. The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver |
| 0 | -- | 0 | Xian Zeng, Peng Zhang 0033, Yali Wang, Chu Qin, Shangying Chen, Weidong He, Lin Tao, Ying Tan, Dan Gao, Bo-hua Wang, Zhe Chen, Weiping Chen, Yu Yang Jiang, Yu Zong Chen. CMAUP: a database of collective molecular activities of useful plants |
| 0 | -- | 0 | Randi Vita, Swapnil Mahajan, James A. Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R. Cantrell, Daniel K. Wheeler, Alessandro Sette, Bjoern Peters. The Immune Epitope Database (IEDB): 2018 update |
| 0 | -- | 0 | Edvard Ehler, Jiri Novotný, Anna Juras, Maciej Chylenski, Ondrej Moravcík, Jan Paces. AmtDB: a database of ancient human mitochondrial genomes |
| 0 | -- | 0 | Yang Yang, Xiating Peng, Pingting Ying, Jianbo Tian, Jiaoyuan Li, Juntao Ke, Ying Zhu, Yajie Gong, Danyi Zou, Nan Yang, Xiaoyang Wang, Shufang Mei, Rong Zhong, Jing Gong, Jiang Chang, Xiaoping Miao. AWESOME: a database of SNPs that affect protein post-translational modifications |
| 0 | -- | 0 | Fiona Cunningham, Premanand Achuthan, Wasiu A. Akanni, James E. Allen, M. Ridwan Amode, Irina M. Armean, Ruth Bennett, Jyothish Bhai, Konstantinos Billis, Sanjay Boddu, Carla A. Cummins, Claire Davidson, Kamalkumar Jayantilal Dodiya, Astrid Gall, Carlos García-Girón, Laurent Gil, Tiago Grego, Leanne Haggerty, Erin Haskell, Thibaut Hourlier, Osagie G. Izuogu, Sophie H. Janacek, Thomas Juettemann, Mike P. Kay, Matthew R. Laird, Ilias Lavidas, Zhicheng Liu, Jane Loveland, José C. Marugán, Thomas Maurel, Aoife C. McMahon, Benjamin Moore, Joannella Morales, Jonathan M. Mudge, Michael Nuhn, Denye Ogeh, Anne Parker, Andrew Parton, Mateus Patricio, Ahamed Imran Abdul Salam, Bianca M. Schmitt, Helen Schuilenburg, Daniel Sheppard, Helen Sparrow, Eloise Stapleton, Marek Szuba, Kieron Taylor, Glen Threadgold, Anja Thormann, Alessandro Vullo, Brandon Walts, Andrea Winterbottom, Amonida Zadissa, Marc Chakiachvili, Adam Frankish, Sarah E. Hunt, Myrto Kostadima, Nick Langridge, Fergal J. Martin, Matthieu Muffato, Emily Perry, Magali Ruffier, Daniel M. Staines, Stephen J. Trevanion, Bronwen L. Aken, Andrew D. Yates, Daniel R. Zerbino, Paul Flicek. Ensembl 2019 |
| 0 | -- | 0 | Bixia Tang, Qing Zhou, Lili Dong, Wulue Li, Xiangquan Zhang, Li Lan, Shuang Zhai, Jingfa Xiao, Zhang Zhang, Yiming Bao, Ya-Ping Zhang, Guo-Dong Wang, Wenming Zhao. iDog: an integrated resource for domestic dogs and wild canids |
| 0 | -- | 0 | Kai Blin, Victòria Pascal Andreu, Emmanuel L. C. de los Santos, Francesco Del Carratore, Sang Yup Lee, Marnix H. Medema, Tilmann Weber. The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters |
| 0 | -- | 0 | Bryony Braschi, Paul Denny, Kristian A. Gray, Tamsin Jones, Ruth L. Seal, Susan Tweedie, Bethan Yates, Elspeth A. Bruford. Genenames.org: the HGNC and VGNC resources in 2019 |
| 0 | -- | 0 | Marina Lizio, Imad Abugessaisa, Shuhei Noguchi, Atsushi Kondo, Akira Hasegawa, Chung-Chau Hon, Michiel J. L. de Hoon, Jessica Severin, Shinya Oki, Yoshihide Hayashizaki, Piero Carninci, Takeya Kasukawa, Hideya Kawaji. Update of the FANTOM web resource: expansion to provide additional transcriptome atlases |
| 0 | -- | 0 | Xuexia Miao, Xi Li, Lifei Wang, Caihong Zheng, Jun Cai. DSMNC: a database of somatic mutations in normal cells |
| 0 | -- | 0 | Samantha Sayers, Li Li, Edison Ong, Shunzhou Deng, Guanghua Fu, Yu Lin, Brian Yang, Shelley Zhang, Zhenzong Fa, Bin Zhao, Zuoshuang Xiang, Yongqing Li, Xing-Ming Zhao, Michal Olszewski, Luonan Chen, Yongqun He. Victors: a web-based knowledge base of virulence factors in human and animal pathogens |
| 0 | -- | 0 | Eric W. Sayers, Richa Agarwala, Evan Bolton, J. Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon, J. Bradley Holmes, Sunghwan Kim 0002, Avi Kimchi, Paul A. Kitts, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Lon Phan, Valerie A. Schneider, Conrad L. Schoch, Kim D. Pruitt, James Ostell. Database resources of the National Center for Biotechnology Information |
| 0 | -- | 0 | Takeshi Obayashi, Yuki Kagaya, Yuichi Aoki, Shu Tadaka, Kengo Kinoshita. COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference |
| 0 | -- | 0 | Pawel Dabrowski-Tumanski, Pawel Rubach, Dimos Goundaroulis, Julien Dorier, Piotr Sulkowski, Kenneth C. Millett, Eric J. Rawdon, Andrzej Stasiak, Joanna I. Sulkowska. KnotProt 2.0: a database of proteins with knots and other entangled structures |
| 0 | -- | 0 | Lorna Richardson, Neil D. Rawlings, Gustavo A. Salazar, Alexandre Almeida, David Haft, Gregory Ducq, Granger G. Sutton, Robert D. Finn. Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes |
| 0 | -- | 0 | Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Lauren Booth, Igor N. Berezovsky. AlloMAPS: allosteric mutation analysis and polymorphism of signaling database |
| 0 | -- | 0 | Marie A. Brunet, Mylène Brunelle, Jean-François Lucier, Vivian Delcourt, Maxime Levesque, Frédéric Grenier, Sondos Samandi, Sébastien Leblanc, Jean-David Aguilar, Pascal Dufour, Jean-Francois Jacques, Isabelle Fournier, Aïda Ouangraoua, Michelle S. Scott, François-Michel Boisvert, Xavier Roucou. OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes |
| 0 | -- | 0 | Leyla Ruzicka, Douglas G. Howe, Sridhar Ramachandran, Sabrina Toro, Ceri E. Van Slyke, Yvonne M. Bradford, Anne E. Eagle, David Fashena, Ken Frazer, Patrick Kalita, Prita Mani, Ryan Martin, Sierra Taylor Moxon, Holly Paddock, Christian Pich 0002, Kevin Schaper, Xiang Shao, Amy Singer, Monte Westerfield. The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources |
| 0 | -- | 0 | Stephen K. Burley, Helen M. Berman, Charmi Bhikadiya, Chunxiao Bi, Li Chen 0022, Luigi Di Costanzo, Cole H. Christie, Ken Dalenberg, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic, Dmytro Guzenko, Brian P. Hudson, Tara Kalro, Yuhe Liang, Robert Lowe, Harry Namkoong, Ezra Peisach, Irina Periskova, Andreas Prlic, Christopher Randle, Alexander S. Rose, Peter W. Rose, Raul Sala, Monica Sekharan, Chenghua Shao, Lihua Tan, Yi-Ping Tao, Yana Valasatava, Maria Voigt, John D. Westbrook, Jesse Woo, Huanwang Yang, Jasmine Young, Marina Zhuravleva, Christine Zardecki. RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy |
| 0 | -- | 0 | Thomas D. Newport, Mark S. P. Sansom, Phillip J. Stansfeld. The MemProtMD database: a resource for membrane-embedded protein structures and their lipid interactions |
| 0 | -- | 0 | Shawez Khan, Federico Taverna, Katerina Rohlenova, Lucas Treps, Vincent Geldhof, Laura de Rooij, Liliana Sokol, Andreas Pircher, Lena-Christin Conradi, Joanna Kalucka, Luc Schoonjans, Guy Eelen, Mieke Dewerchin, Tobias Karakach, Xuri Li, Jermaine Goveia, Peter Carmeliet. EndoDB: a database of endothelial cell transcriptomics data |
| 0 | -- | 0 | Yannis Nevers, Arnaud Kress, Audrey Defosset, Raymond Ripp, Benjamin Linard, Julie D. Thompson, Olivier Poch, Odile Lecompte. OrthoInspector 3.0: open portal for comparative genomics |
| 0 | -- | 0 | Frederik Otzen Bagger, Savvas Kinalis, Nicolas Rapin. BloodSpot: a database of healthy and malignant haematopoiesis updated with purified and single cell mRNA sequencing profiles |
| 0 | -- | 0 | Madalina Giurgiu, Julian Reinhard, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Andreas Ruepp. CORUM: the comprehensive resource of mammalian protein complexes - 2019 |
| 0 | -- | 0 | Jianbo Tian, Zhihua Wang, Shufang Mei, Nan Yang, Yang Yang, Juntao Ke, Ying Zhu, Yajie Gong, Danyi Zou, Xiating Peng, Xiaoyang Wang, Hao Wan, Rong Zhong, Jiang Chang, Jing Gong, Leng Han, Xiaoping Miao. CancerSplicingQTL: a database for genome-wide identification of splicing QTLs in human cancer |
| 0 | -- | 0 | Sebastian Köhler 0001, Leigh Carmody, Nicole Vasilevsky, Julius O. B. Jacobsen, Daniel Danis, Jean-Philippe Gourdine, Michael A. Gargano, Nomi L. Harris, Nicolas Matentzoglu, Julie McMurry, David Osumi-Sutherland, Valentina Cipriani, James P. Balhoff, Tom Conlin, Hannah Blau, Gareth Baynam, Richard Palmer, Dylan Gratian, Hugh J. S. Dawkins, Michael Segal 0002, Anna C. Jansen, Ahmed Muaz, Willie H. Chang, Jenna Bergerson, Stanley J. F. Laulederkind, Zafer Yüksel, Sergi Beltran, Alexandra F. Freeman, Panagiotis I. Sergouniotis, Daniel Durkin, Andrea L. Storm, Marc Hanauer, Michael Brudno, Susan M. Bello, Murat Sincan, Kayli Rageth, Matthew T. Wheeler, Renske Oegema, Halima Lourghi, Maria G. Della Rocca, Rachel Thompson, Francisco Castellanos, James Priest, Charlotte Cunningham-Rundles, Ayushi Hegde, Ruth C. Lovering, Catherine Hajek, Annie Olry, Luigi Notarangelo, Morgan Similuk, Xingmin A. Zhang, David Gómez-Andrés, Hanns Lochmüller, Hélène Dollfus, Sergio Rosenzweig, Shruti Marwaha, Ana Rath, Kathleen Sullivan, Cynthia L. Smith, Joshua D. Milner, Dorothée Leroux, Cornelius F. Boerkoel, Amy Klion, Melody C. Carter, Tudor Groza, Damian Smedley, Melissa A. Haendel, Chris Mungall, Peter N. Robinson. Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources |
| 0 | -- | 0 | Dieudonne van der Meer, Syd Barthorpe, Wanjuan Yang, Howard Lightfoot, Caitlin Hall, James Gilbert, Hayley E. Francies, Mathew Garnett. Cell Model Passports - a hub for clinical, genetic and functional datasets of preclinical cancer models |
| 0 | -- | 0 | Sunghwan Kim 0002, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton. PubChem 2019 update: improved access to chemical data |
| 0 | -- | 0 | Maximilian Haeussler, Ann S. Zweig, Cath Tyner, Matthew L. Speir, Kate R. Rosenbloom, Brian J. Raney, Christopher M. Lee, Brian T. Lee, Angie S. Hinrichs, Jairo Navarro Gonzalez, David Gibson, Mark Diekhans, Hiram Clawson, Jonathan Casper, Galt P. Barber, David Haussler, Robert M. Kuhn, W. James Kent. The UCSC Genome Browser database: 2019 update |
| 0 | -- | 0 | David Mendez, Anna Gaulton, A. Patrícia Bento, Jon Chambers, Marleen De Veij, Eloy Felix, María P. Magariños, Juan F. Mosquera, Prudence Mutowo-Meullenet, Michal Nowotka, María Gordillo-Marañón, Fiona Hunter, Laura Junco, Grace Mugumbate, Milagros Rodriguez-Lopez, Francis Atkinson, Nicolas Bosc, Chris J. Radoux, Aldo Segura-Cabrera, Anne Hersey, Andrew R. Leach. ChEMBL: towards direct deposition of bioassay data |
| 0 | -- | 0 | Evgenia V. Kriventseva, Dmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Renata Dias, Felipe A. Simão, Evgeny M. Zdobnov. OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs |
| 0 | -- | 0 | Peter W. Harrison, Blaise T. F. Alako, Clara Amid, Ana Cerdeño-Tárraga, Iain Cleland, Sam Holt, Abdulrahman Hussein, Suran Jayathilaka, Simon Kay, Thomas M. Keane, Rasko Leinonen, Xin Liu 0006, Josué Martínez-Villacorta, Annalisa Milano, Nima Pakseresht, Jeena Rajan, Kethi Reddy, Edward Richards, Marc Rossello, Nicole Silvester, Dmitriy Smirnov 0002, Ana Luisa Toribio, Senthilnathan Vijayaraja, Guy Cochrane. The European Nucleotide Archive in 2018 |
| 0 | -- | 0 | Di Liu, Linna Zhao, Zhaoyang Wang, Xu Zhou, Xiuzhao Fan, Yong Li, Jing Xu, Simeng Hu, Miaomiao Niu, Xiuling Song, Ying Li, Lijiao Zuo, Changgui Lei, Meng Zhang, Guoping Tang, Min Huang, Nan Zhang, Lian Duan, Hongchao Lv, Mingming Zhang, Jin Li, Liangde Xu, Fanwu Kong, Rennan Feng, Yongshuai Jiang. EWASdb: epigenome-wide association study database |
| 0 | -- | 0 | BIG Data Center. Database Resources of the BIG Data Center in 2019 |
| 0 | -- | 0 | Jim Thurmond, Joshua L. Goodman, Victor B. Strelets, Helen Attrill, Sian L. Gramates, Steven J. Marygold, Beverley Matthews, Gillian H. Millburn, Giulia Antonazzo, Vitor Trovisco, Thomas C. Kaufman, Brian R. Calvi, the FlyBase Consortium. FlyBase 2.0: the next generation |
| 0 | -- | 0 | Sara El-Gebali, Jaina Mistry, Alex Bateman, Sean R. Eddy, Aurelien Luciani, Simon C. Potter, Matloob Qureshi, Lorna Richardson, Gustavo A. Salazar, Alfredo Smart, Erik L. L. Sonnhammer, Layla Hirsh, Lisanna Paladin, Damiano Piovesan, Silvio C. E. Tosatto, Robert D. Finn. The Pfam protein families database in 2019 |
| 0 | -- | 0 | Man Li, Lin Xia, Yuansheng Zhang, Guangyi Niu, Mengwei Li, Pei Wang, Yang Zhang, Jian Sang, Dong Zou, Songnian Hu, Lili Hao, Zhang Zhang 0002. Plant editosome database: a curated database of RNA editosome in plants |
| 0 | -- | 0 | Zhenyu Bao, Zhen Yang, Zhou Huang, Yiran Zhou, Qinghua Cui, Dong Dong. LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases |
| 0 | -- | 0 | John Rivera, Soile V. E. Keränen, Steven M. Gallo, Marc S. Halfon. REDfly: the transcriptional regulatory element database for Drosophila |
| 0 | -- | 0 | John-Marc Chandonia, Naomi K. Fox, Steven E. Brenner. SCOPe: classification of large macromolecular structures in the structural classification of proteins - extended database |
| 0 | -- | 0 | Michael Böhm, Andreas Bohne-Lang, Martin Frank, Alexander Loß, Miguel A. Rojas-Macias, Thomas Lütteke. Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update) |
| 0 | -- | 0 | Alex L. Mitchell, Teresa K. Attwood, Patricia C. Babbitt, Matthias Blum, Peer Bork, Alan Bridge, Shoshana D. Brown, Hsin-Yu Chang, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Hongzhan Huang, Ivica Letunic, Rodrigo Lopez, Aurelien Luciani, Fábio Madeira, Aron Marchler-Bauer, Huaiyu Mi, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Arun P. Pandurangan, Typhaine Paysan-Lafosse, Sebastien Pesseat, Simon C. Potter, Matloob Qureshi, Neil D. Rawlings, Nicole Redaschi, Lorna Richardson, Catherine Rivoire, Gustavo A. Salazar, Amaia Sangrador-Vegas, Christian J. A. Sigrist, Ian Sillitoe, Granger G. Sutton, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Siew-Yit Yong, Robert D. Finn. InterPro in 2019: improving coverage, classification and access to protein sequence annotations |
| 0 | -- | 0 | Liang Cheng 0006, Pingping Wang, Rui Tian, Song Wang, Qinghua Guo, Meng Luo, Wenyang Zhou, Guiyou Liu, Huijie Jiang, Qinghua Jiang. LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse |
| 0 | -- | 0 | Minoru Kanehisa, Yoko Sato, Miho Furumichi, Kanae Morishima, Mao Tanabe. New approach for understanding genome variations in KEGG |
| 0 | -- | 0 | Rose Oughtred, Chris Stark, Bobby-Joe Breitkreutz, Jennifer M. Rust, Lorrie Boucher, Christie S. Chang, Nadine Kolas, Lara O'Donnell, Genie Leung, Rochelle McAdam, Frederick Zhang, Sonam Dolma, Andrew Willems, Jasmin Coulombe-Huntington, Andrew Chatr-aryamontri, Kara Dolinski, Mike Tyers. The BioGRID interaction database: 2019 update |
| 0 | -- | 0 | Wenyu Shi, Heyuan Qi, Qinglan Sun, Guomei Fan, Shuangjiang Liu, Jun Wang, Baoli Zhu, Hongwei Liu, Fangqing Zhao, Xiaochen Wang, Xiaoxuan Hu, Wei Li, Jia Liu, Ye Tian, Linhuan Wu, Juncai Ma. gcMeta: a Global Catalogue of Metagenomics platform to support the archiving, standardization and analysis of microbiome data |
| 0 | -- | 0 | Peter V. Hornbeck, Jon M. Kornhauser, Vaughan Latham, Beth Murray, Vidhisha Nandhikonda, Alex S. Nord, Elzbieta Skrzypek, Travis J. Wheeler, Bin Zhang, Florian Gnad. 15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms |
| 0 | -- | 0 | John L. Portwood II, Margaret Woodhouse, Ethalinda K. S. Cannon, Jack M. Gardiner, Lisa C. Harper, Mary L. Schaeffer, Jesse R. Walsh, Taner Z. Sen, Kyoung Tak Cho, David A. Schott, Bremen L. Braun, Miranda Dietze, Brittney Dunfee, Christine G. Elsik, Nancy Manchanda, Ed Coe, Marty Sachs, Philip Stinard, Josh Tolbert, Shane Zimmerman, Carson M. Andorf. MaizeGDB 2018: the maize multi-genome genetics and genomics database |
| 0 | -- | 0 | Benjamin Dubreuil, Ehud Sass, Yotam Nadav, Meta Heidenreich, James Georgeson, Uri Weill, Yuanqiang Duan, Matthias Meurer, Maya Schuldiner, Michael Knop, Emmanuel D. Levy. YeastRGB: comparing the abundance and localization of yeast proteins across cells and libraries |
| 0 | -- | 0 | Antonia Lock, Kim Rutherford, Midori A. Harris, Jacqueline Hayles, Stephen G. Oliver, Jürg Bähler, Valerie Wood. PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information |
| 0 | -- | 0 | Xianfeng Li, Leisheng Shi, Yan Wang, Jianing Zhong, Xiaolu Zhao, Huajing Teng, Xiaohui Shi, Haonan Yang, Shasha Ruan, Mingkun Li, Zhongsheng Sun, Qimin Zhan, Fengbiao Mao. OncoBase: a platform for decoding regulatory somatic mutations in human cancers |
| 0 | -- | 0 | Yaping Guo, Di Peng, Jiaqi Zhou, Shaofeng Lin, Chenwei Wang, Wanshan Ning, Haodong Xu, Wankun Deng, Yu Xue. iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains |
| 0 | -- | 0 | Yongbing Zhao, Jinyue Wang, Fang Liang, Yanxia Liu, Qi Wang, Hao Zhang, Meiye Jiang, Zhewen Zhang, Wenming Zhao, Yiming Bao, Zhang Zhang 0002, Jiayan Wu, Yan W. Asmann, Rujiao Li, Jing-Fa Xiao. NucMap: a database of genome-wide nucleosome positioning map across species |
| 0 | -- | 0 | Ayana Dagan-Wiener, Antonella Di Pizio, Ido Nissim, Malkeet Singh Bahia, Nitzan Dubovski, Eitan Margulis, Masha Y. Niv. BitterDB: taste ligands and receptors database in 2019 |
| 0 | -- | 0 | Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Roy McMorran, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly. The Comparative Toxicogenomics Database: update 2019 |
| 0 | -- | 0 | Eric W. Sayers, Mark Cavanaugh, Karen Clark, James Ostell, Kim D. Pruitt, Ilene Karsch-Mizrachi. GenBank |
| 0 | -- | 0 | Jose M. Dana, Aleksandras Gutmanas, Nidhi Tyagi, Guoying Qi, Claire O'Donovan, Maria Jesus Martin, Sameer Velankar. SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins |
| 0 | -- | 0 | Benjamin Lang, Alexandros Armaos, Gian Gaetano Tartaglia. RNAct: Protein-RNA interaction predictions for model organisms with supporting experimental data |
| 0 | -- | 0 | Guangyi Niu, Dong Zou, Mengwei Li, Yuansheng Zhang, Jian Sang, Lin Xia, Man Li, Lin Liu, Jiabao Cao, Yang Zhang, Pei Wang, Songnian Hu, Lili Hao, Zhang Zhang 0002. Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human |
| 0 | -- | 0 | Yue Gao, Peng Wang, Yanxia Wang, Xueyan Ma, Hui Zhi, Dianshuang Zhou, Xin Li, Ying Fang, Weitao Shen, Yingqi Xu, Shipeng Shang, Lihua Wang, Li Wang, Shangwei Ning, Xia Li 0004. Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers |
| 0 | -- | 0 | Ernesto Aparicio-Puerta, David Jáspez, Ricardo Lebrón, Danijela Koppers-Lalic, Juan A. Marchal, Michael Hackenberg. liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies |
| 0 | -- | 0 | Peng Wang, Xin Li, Yue Gao, Qiuyan Guo, Yanxia Wang, Ying Fang, Xueyan Ma, Hui Zhi, Dianshuang Zhou, Weitao Shen, Weisha Liu, Lihua Wang, Yunpeng Zhang, Shangwei Ning, Xia Li. LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low- and high-throughput experiments |
| 0 | -- | 0 | Morad M. Mokhtar, Mohamed A. M. Atia. SSRome: an integrated database and pipelines for exploring microsatellites in all organisms |
| 0 | -- | 0 | Constance M. Smith, Terry F. Hayamizu, Jacqueline H. Finger, Susan M. Bello, Ingeborg J. McCright, Jingxia Xu, Richard M. Baldarelli, Jon S. Beal, Jeff Campbell, Lori E. Corbani, Pete J. Frost, Jill R. Lewis, Sharon C. Giannatto, Dave Miers, David R. Shaw, James A. Kadin, Joel E. Richardson, Cynthia L. Smith, Martin Ringwald. The mouse Gene Expression Database (GXD): 2019 update |
| 0 | -- | 0 | Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba, Masaki Kato. MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons |
| 0 | -- | 0 | Ivan S. Yevshin, Ruslan N. Sharipov, Semyon Kolmykov, Yury V. Kondrakhin, Fedor A. Kolpakov. GTRD: a database on gene transcription regulation - 2019 update |
| 0 | -- | 0 | Valentina Galata, Tobias Fehlmann, Christina Backes, Andreas Keller. PLSDB: a resource of complete bacterial plasmids |
| 0 | -- | 0 | Philipp Rentzsch, Daniela Witten, Gregory M. Cooper, Jay Shendure, Martin Kircher. CADD: predicting the deleteriousness of variants throughout the human genome |
| 0 | -- | 0 | wwPDB consortium. Protein Data Bank: the single global archive for 3D macromolecular structure data |
| 0 | -- | 0 | Lisa Jeske, Sandra Placzek, Ida Schomburg, Antje Chang, Dietmar Schomburg. BRENDA in 2019: a European ELIXIR core data resource |
| 0 | -- | 0 | Yasset Pérez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal Llinares, Suresh Hewapathirana, Deepti J. Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher, Enrique Pérez, Julian Uszkoreit, Julianus Pfeuffer, Timo Sachsenberg, Sule Yilmaz, Shivani Tiwary, Jürgen Cox, Enrique Audain, Mathias Walzer, Andrew Jarnuczak, Tobias Ternent, Alvis Brazma, Juan Antonio Vizcaíno. The PRIDE database and related tools and resources in 2019: improving support for quantification data |
| 0 | -- | 0 | Chi-Nga Chow, Tzong-Yi Lee, Yu-Cheng Hung, Guan-Zhen Li, Kuan-Chieh Tseng, Ya-Hsin Liu, Po-Li Kuo, Han-Qin Zheng, Wen-Chi Chang. PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants |
| 0 | -- | 0 | Nicholas Kinney, Kyle Titus-Glover, Jonathan D. Wren, Robin T. Varghese, Pawel Michalak, Han Liao, Ramu Anandakrishnan, Arichanah Pulenthiran, Lin Kang, Harold R. Garner. CAGm: a repository of germline microsatellite variations in the 1000 genomes project |
| 0 | -- | 0 | Jiajia Wang, Peng Zhang, Yiping Lu, Yanyan Li, Yu Zheng, Yunchao Kan, Runsheng Chen, Shunmin He. piRBase: a comprehensive database of piRNA sequences |
| 0 | -- | 0 | Nathalie Conte, Jeremy C. Mason, Csaba Halmagyi, Steven B. Neuhauser, Abayomi Mosaku, Galabina Yordanova, Aikaterini Chatzipli, Dale A. Begley, Debra M. Krupke, Helen E. Parkinson, Terrence F. Meehan, Carol C. Bult. PDX Finder: A portal for patient-derived tumor xenograft model discovery |
| 0 | -- | 0 | Kai Yu, Qingfeng Zhang, Zekun Liu, Qi Zhao, Xiaolong Zhang, Yan Wang, Zi-Xian Wang, Ying Jin, Xiaoxing Li, Zexian Liu, Rui-Hua Xu. qPhos: a database of protein phosphorylation dynamics in humans |
| 0 | -- | 0 | A. David Páez-Espino, Simon Roux, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Marcel Huntemann, T. B. K. Reddy, Joan Carles Pons, Mercè Llabrés, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides. IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes |
| 0 | -- | 0 | Péter Mendik, Levente Dobronyi, Ferenc Hári, Csaba Kerepesi, Leonardo Maia-Moço, Donát Buszlai, Peter Csermely, Daniel V. Veres. Translocatome: a novel resource for the analysis of protein translocation between cellular organelles |
| 0 | -- | 0 | Jaime Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia K. Forslund, Helen Cook, Daniel R. Mende, Ivica Letunic, Thomas Rattei, Lars Juhl Jensen, Christian von Mering, Peer Bork. eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses |
| 0 | -- | 0 | Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Yoshinori Yamanouchi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Mio Iwasaki, Naoyuki Sugiyama, Satoshi Tanaka, Susumu Goto, Yasushi Ishihama. The jPOST environment: an integrated proteomics data repository and database |
| 0 | -- | 0 | Quy Xiao Xuan Lin, Stephanie Sian, Omer An, Denis Thieffry, Sudhakar Jha, Touati Benoukraf. MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles |
| 0 | -- | 0 | Masahiko Morita, Kazuro Shimokawa, Masaomi Nishimura, Sakiko Nakamura, Yuki Tsujimura, Satoko Takemoto, Takehiro Tawara, Hideo Yokota, Shuhei Wemler, Daisuke Miyamoto, Hidetoshi Ikeno, Akira Sato, Teiichi Furuichi, Norio Kobayashi, Yoshihiro Okumura, Yoko Shiraishi-Yamaguchi, Yuko Okamura-Oho. ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks |
| 0 | -- | 0 | Bo Liu, Dandan Zheng, Qi Jin, Lihong Chen, Jian Yang 0007. VFDB 2019: a comparative pathogenomic platform with an interactive web interface |
| 0 | -- | 0 | John G. Tate, Sally Bamford, Harry Jubb, Zbyslaw Sondka, David Beare, Nidhi Bindal, Harry Boutselakis, Charlotte Cole, Celestino Creatore, Elisabeth Dawson, Peter Fish, Bhavana Harsha, Charlie Hathaway, Steve C. Jupe, Chai Yin Kok, Kate Noble, Laura Ponting, Christopher C. Ramshaw, Claire E. Rye, Helen E. Speedy, Raymund Stefancsik, Sam L. Thompson, Shicai Wang, Sari Ward, Peter J. Campbell, Simon A. Forbes. COSMIC: the Catalogue Of Somatic Mutations In Cancer |
| 0 | -- | 0 | Huating Yuan, Min Yan, Guanxiong Zhang, Wei Liu, Chunyu Deng, Gaoming Liao, Liwen Xu, Tao Luo, Haoteng Yan, Zhilin Long, Aiai Shi, Tingting Zhao, Yun Xiao 0001, Xia Li 0004. CancerSEA: a cancer single-cell state atlas |
| 0 | -- | 0 | Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane Loveland, Jonathan M. Mudge, Cristina Sisu, James Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Silvia Carbonell Sala, Jacqueline Chrast, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Toby Hunt, Osagie G. Izuogu, Julien Lagarde, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Jinuri Xu, Andrew Yates, Daniel R. Zerbino, Yan Zhang 0032, Bronwen L. Aken, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond, Michael L. Tress, Paul Flicek. GENCODE reference annotation for the human and mouse genomes |
| 0 | -- | 0 | Lynn M. Schriml, Elvira Mitraka, James B. Munro, Becky Tauber, Mike Schor, Lance Nickle, Victor Felix, Linda Jeng, Cynthia Bearer, Richard Lichenstein, Katharine Bisordi, Nicole Campion, Brooke Hyman, David Kurland, Connor Patrick Oates, Siobhan Kibbey, Poorna Sreekumar, Chris Le, Michelle G. Giglio, Carol Greene. Human Disease Ontology 2018 update: classification, content and workflow expansion |
| 0 | -- | 0 | Hongwei Wang, Ludong Yang, Yan Wang, Leshi Chen, Huihui Li, Zhi Xie. RPFdb v2.0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling |
| 0 | -- | 0 | The UniProt Consortium. UniProt: a worldwide hub of protein knowledge |
| 0 | -- | 0 | Huaiyu Mi, Anushya Muruganujan, Dustin Ebert, Xiaosong Huang, Paul D. Thomas. PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools |
| 0 | -- | 0 | Alberto Noronha, Jennifer Modamio, Yohan Jarosz, Elisabeth Guerard, Nicolas Sompairac, German A. Preciat Gonzalez, Anna Dröfn Daníelsdóttir, Max Krecke, Diane Merten, Hulda S. Haraldsdóttir, Almut Heinken, Laurent Heirendt, Stefania Magnusdottir, Dmitry A. Ravcheev, Swagatika Sahoo, Piotr Gawron, Lucia Friscioni, Beatriz Garcia, Mabel Prendergast, Alberto Puente, Mariana Rodrigues, Akansha Roy, Mouss Rouquaya, Luca Wiltgen, Alise Zagare, Elisabeth John, Maren Krueger, Inna Kuperstein, Andrei Zinovyev, Reinhard Schneider 0002, Ronan M. T. Fleming, Ines Thiele. The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease |
| 0 | -- | 0 | Daniel J. Rigden, Xosé M. Fernández-Suárez. The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection |
| 0 | -- | 0 | Hao Luo 0002, Feng Gao 0001. DoriC 10.0: an updated database of replication origins in prokaryotic genomes including chromosomes and plasmids |
| 0 | -- | 0 | The RNAcentral Consortium. RNAcentral: a hub of information for non-coding RNA sequences |
| 0 | -- | 0 | Zhou Huang, Jiangcheng Shi, Yuanxu Gao, Chunmei Cui, Shan Zhang, Jianwei Li, Yuan Zhou, Qinghua Cui. HMDD v3.0: a database for experimentally supported human microRNA-disease associations |
| 0 | -- | 0 | Kai-Yao Huang, Tzong-Yi Lee, Hui-Ju Kao, Chen-Tse Ma, Chao-Chun Lee, Tsai-Hsuan Lin, Wen-Chi Chang, Hsien-Da Huang. dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications |
| 0 | -- | 0 | François Bonnardel, Julien Mariethoz, Sebastian Salentin, Xavier Robin, Michael Schroeder 0001, Serge Pérez, Frédérique Lisacek, Anne Imberty. UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands |
| 0 | -- | 0 | Wei-Sheng Wu, Jordan S. Brown, Tsung-Te Chen, Yu-Han Chu, Wei-Che Huang, Shikui Tu, Heng-Chi Lee. piRTarBase: a database of piRNA targeting sites and their roles in gene regulation |
| 0 | -- | 0 | Awais Athar, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A. Fonseca, Robert Petryszak, Irene Papatheodorou, Ugis Sarkans, Alvis Brazma. ArrayExpress update - from bulk to single-cell expression data |
| 0 | -- | 0 | Andrei Rozanski, HongKee Moon, Holger Brandl, José M. Martín-Durán, Markus A. Grohme, Katja Hüttner, Kerstin Bartscherer, Ian Henry, Jochen C. Rink. PlanMine 3.0 - improvements to a mineable resource of flatworm biology and biodiversity |
| 0 | -- | 0 | Charles E. Cook, Rodrigo Lopez, Oana Stroe, Guy Cochrane, Cath Brooksbank, Ewan Birney, Rolf Apweiler. The European Bioinformatics Institute in 2018: tools, infrastructure and training |
| 0 | -- | 0 | The Gene Ontology Consortium. The Gene Ontology Resource: 20 years and still GOing strong |
| 0 | -- | 0 | Sook Jung, Taein Lee, Chun-Huai Cheng, Katheryn Buble, Ping Zheng, Jing Yu, Jodi Humann, Stephen P. Ficklin, Ksenija Gasic, Kristin Scott, Morgan Frank, Sushan Ru, Heidi Hough, Kate Evans, Cameron Peace, Mercy A. Olmstead, Lisa W. DeVetter, James McFerson, Michael Coe, Jill L. Wegrzyn, Margaret E. Staton, Albert G. Abbott, Dorrie Main. 15 years of GDR: New data and functionality in the Genome Database for Rosaceae |
| 0 | -- | 0 | Tiago F. Jesus, Bruno Ribeiro-Gonçalves, Diogo N. Silva, Valeria Bortolaia, Mário Ramirez, João A. Carriço. Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data |
| 0 | -- | 0 | Damian Szklarczyk, Annika L. Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T. Doncheva, John H. Morris, Peer Bork, Lars Juhl Jensen, Christian von Mering. STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets |
| 0 | -- | 0 | The RNAcentral Consortium. RNAcentral: a hub of information for non-coding RNA sequences |
| 0 | -- | 0 | Denise Carvalho-Silva, Andrea Pierleoni, Miguel Pignatelli, Chuang Kee Ong, Luca Fumis, Nikiforos Karamanis, Miguel Carmona, Adam Faulconbridge, Andrew Hercules, Elaine McAuley, Alfredo Miranda, Gareth Peat, Michaela Spitzer, Jeffrey Barrett, David G. Hulcoop, Eliseo Papa, Gautier Koscielny, Ian Dunham. Open Targets Platform: new developments and updates two years on |